RNA id: TU270114


Basic Information

Item Value
RNA id TU270114
length 260
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G199211
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 449907 ~ 450166 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcttctcacacacaggcacagaggcctCCTGTCCACTGCTCACACGCAAGCACATAGGgaccctgtcctctcctcacacacaggccaacaggtctcctgtccactcctcacacacaggccaacaggcctcctctcctctcctcacacaaaggcacacaggcctcctgtcctctcctcacacacacagttaaacagtcctccactcctctcctcacacacatgcacacaggcctcctgtccactcctcacacacaggcac

Function

GO:

id name namespace
GO:0021872 forebrain generation of neurons biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0021884 forebrain neuron development biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0030900 forebrain development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270085 lncRNA upstream 57646 391643 ~ 392261 (+) True G199182
TU270081 lncRNA upstream 67537 382017 ~ 382370 (+) True G199178
TU270041 lncRNA upstream 223743 217883 ~ 226164 (+) True G199143
TU270037 lncRNA upstream 254521 194961 ~ 195386 (+) True G199139
TU270036 lncRNA upstream 260733 188816 ~ 189174 (+) True G199138
XR_005637347.1 lncRNA downstream 21688 471854 ~ 474292 (+) True LOC120549206
TU270118 lncRNA downstream 24821 474987 ~ 477559 (+) True LOC120549205
TU270121 lncRNA downstream 24821 474987 ~ 476328 (+) False LOC120549205
XR_005637346.1 lncRNA downstream 24964 475130 ~ 477564 (+) False LOC120549205
TU270147 lncRNA downstream 143016 593182 ~ 593384 (+) True G199236
XM_039786597.1 mRNA upstream 22372 425361 ~ 427535 (+) True LOC120549579
XM_039785912.1 mRNA upstream 327354 121003 ~ 122553 (+) True LOC120549203
XM_039786551.1 mRNA upstream 387737 57972 ~ 62170 (+) True LOC120549549
XM_039785909.1 mRNA upstream 394313 53916 ~ 55594 (+) True LOC120549201
XM_039785911.1 mRNA upstream 399477 44184 ~ 50430 (+) True LOC120549202
XM_039785914.1 mRNA downstream 206164 656330 ~ 658073 (+) True LOC120549204
XM_039785381.1 mRNA downstream 546455 996621 ~ 1001424 (+) True LOC120548863
XM_039785383.1 mRNA downstream 1340069 1790235 ~ 1792718 (+) True LOC120548868
XM_039785385.1 mRNA downstream 1343714 1793880 ~ 1800729 (+) True LOC120548869
XM_039785386.1 mRNA downstream 1368037 1818203 ~ 1819621 (+) True LOC120548870
XR_005637528.1 other upstream 183947 265798 ~ 265960 (+) True LOC120550040
XR_005637527.1 other upstream 184581 265165 ~ 265326 (+) True LOC120550039
XR_005637525.1 other upstream 185849 263897 ~ 264058 (+) True LOC120550036
XR_005637524.1 other upstream 186494 263253 ~ 263413 (+) True LOC120550034
XR_005637513.1 other upstream 187138 262606 ~ 262769 (+) True LOC120550023
unassigned_transcript_1125 other downstream 20484 470650 ~ 470722 (+) True trnav-aac_28
TU270249 other downstream 512943 963109 ~ 992012 (+) True G199306
TU270323 other downstream 649418 1099584 ~ 1101404 (+) True LOC120549526
XR_005637626.1 other downstream 959858 1410024 ~ 1410142 (+) True LOC120550151
XR_005637719.1 other downstream 960082 1410248 ~ 1410366 (+) True LOC120550347

Expression Profile