Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00071604 |
| length | 6295 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 35 |
| gene id | XLOC_036671 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 43379436 ~ 43574935 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030097 | hemopoiesis | biological_process |
| GO:0030099 | myeloid cell differentiation | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0030223 | neutrophil differentiation | biological_process |
| GO:0030225 | macrophage differentiation | biological_process |
| GO:0060218 | hematopoietic stem cell differentiation | biological_process |
| GO:0017053 | transcription repressor complex | cellular_component |
| GO:0000118 | histone deacetylase complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0035257 | nuclear hormone receptor binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0042826 | histone deacetylase binding | molecular_function |
| GO:0003714 | transcription corepressor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030616-81 | Predicted to enable transcription corepressor activity. Acts upstream of or within hematopoietic stem cell differentiation; macrophage differentiation; and neutrophil differentiation. Is expressed in several structures, including anterior axial hypoblast; cardiovascular system; central nervous system; eye; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in osteoarthritis. Orthologous to human NCOR2 (nuclear receptor corepressor 2). |
| ensembl_id | ENSDART00000140618 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00072080 | lncRNA | downstream | 309191 | 43059687 ~ 43072423 (-) | False | XLOC_036669 |
| TCONS_00072081 | lncRNA | downstream | 309205 | 43059762 ~ 43072409 (-) | True | XLOC_036669 |
| TCONS_00072079 | lncRNA | downstream | 1596841 | 41784473 ~ 41784773 (-) | True | XLOC_036660 |
| TCONS_00072078 | lncRNA | downstream | 1597197 | 41783996 ~ 41784417 (-) | True | XLOC_036659 |
| TCONS_00071584 | lncRNA | downstream | 1862559 | 41514374 ~ 41519055 (-) | True | XLOC_036657 |
| TCONS_00071610 | lncRNA | upstream | 239285 | 43695310 ~ 43695713 (-) | False | XLOC_036672 |
| TCONS_00071614 | lncRNA | upstream | 289747 | 43745772 ~ 43746364 (-) | False | XLOC_036673 |
| TCONS_00071620 | lncRNA | upstream | 478570 | 43934595 ~ 43940177 (-) | True | XLOC_036676 |
| TCONS_00071636 | lncRNA | upstream | 776814 | 44232839 ~ 44234512 (-) | False | XLOC_036680 |
| TCONS_00072509 | lncRNA | upstream | 776814 | 44232839 ~ 44238627 (-) | False | XLOC_036680 |
| TCONS_00071601 | mRNA | downstream | 223128 | 43096165 ~ 43158486 (-) | True | XLOC_036670 |
| TCONS_00071600 | mRNA | downstream | 260770 | 43094799 ~ 43120844 (-) | False | XLOC_036670 |
| TCONS_00071596 | mRNA | downstream | 669041 | 42641812 ~ 42712573 (-) | False | XLOC_036667 |
| TCONS_00071606 | mRNA | upstream | 212451 | 43668476 ~ 43721359 (-) | False | XLOC_036672 |
| TCONS_00071607 | mRNA | upstream | 215175 | 43671200 ~ 43689324 (-) | False | XLOC_036672 |
| TCONS_00071608 | mRNA | upstream | 216050 | 43672075 ~ 43677762 (-) | False | XLOC_036672 |
| TCONS_00071609 | mRNA | upstream | 239204 | 43695229 ~ 43721359 (-) | False | XLOC_036672 |
| TCONS_00071611 | mRNA | upstream | 256199 | 43712224 ~ 43716897 (-) | True | XLOC_036672 |
| TCONS_00071599 | other | downstream | 476972 | 42860031 ~ 42904642 (-) | True | XLOC_036668 |
| TCONS_00071593 | other | downstream | 812388 | 42549138 ~ 42569226 (-) | False | XLOC_036665 |
| TCONS_00071589 | other | downstream | 873108 | 42508390 ~ 42508506 (-) | True | XLOC_036664 |
| TCONS_00071588 | other | downstream | 1029297 | 42352201 ~ 42352317 (-) | True | XLOC_036663 |
| TCONS_00071587 | other | downstream | 1247495 | 42134003 ~ 42134119 (-) | True | XLOC_036662 |
| TCONS_00071629 | other | upstream | 584771 | 44040796 ~ 44040913 (-) | True | XLOC_036678 |
| TCONS_00071640 | other | upstream | 884479 | 44340504 ~ 44341615 (-) | False | XLOC_036682 |
| TCONS_00071642 | other | upstream | 885516 | 44341541 ~ 44344742 (-) | True | XLOC_036682 |
| TCONS_00071656 | other | upstream | 1744835 | 45200860 ~ 45202077 (-) | True | XLOC_036696 |
| TCONS_00071662 | other | upstream | 1955556 | 45411581 ~ 45411745 (-) | True | XLOC_036699 |
