XLOC_036696


Basic Information

Item Value
gene id XLOC_036696
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 45200851 ~ 45202970 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072082
GTTTTGCAAAGACTTCGTTCACGTTTGGAAACTGCTATTGGACGCCTACCCCTTGACATGGACTTCCTAGAGTTTATCTGCTCGCAAGAATTGGTCTTTTTAAGTGCTGTATCCAATTCAGTTACCATACCACAGGACATTATGGATGGCATCACAGAACTGCTTGGACTAATTCAGCTCAACCTGTCAAACGAGGAGATACGCACTCCTACTAATGTTCTTCAGGAGTCAGGGTCGATGGGACGGCCACGTCTTGTCATCTCACCAGATTTCATCACCAATCTCTTGGACATAAACTGTTCTGTTCCAAccattgctagcatgattggaGTAAGCACACGCACAGTATTTAGGCGAATGTCTGAATGTAACCTTTCTGTTCGGGCACGATATAGTACTCTCACAGATGAAGAATTAGACGATTGTGTGAAAGAATTACAACGTCACATCCCTCACTGTGGATACAGAATGATGAGAGGAGCTCTAAAGGCAAGAGGACACCTAGTCCAGTTTGAACGGGTCAGAGCTTCATTACACCGGGTTGACACACTTGGAGTCCTGTCCCGAATGACACAGATGGGCTGTGTGGTACGAAGGACCTATTCAGTCTCTAGTCCTCGGTCAATAATGCACATTGACACAAATCATAAGTTGATTCGCTACAATATAGTCATCTTTGGTGGTGTGGATGGCTTTTCACGAAAGATAATGTACCTTGGAGCTGCCACTAATAACCTCGCAGCAACTACCTTGGATTTTTTTCAGGAAGCAGTAGAGACATTTGGCTTTCCTCTCAGGGTACGAGGTGATCAGGGGGTTGAGAATGTGGATGTGGCTCGCCTTATGTTTACCGTTCGTGGAACTGGAAAGGGCAGCTTCATTTCTGGAAAGAGCATACACAATCAGCGTATTGAGAGGCTGTGGAGAGACGTCTGGACATCAGTAACAAATGTTTACTATGATGTTTTACATGGTTTGGAAGAAGGTGGCTACCTTGACATTTCTGACCATACTCACCTCTTCTGCTGCCACTATGTATTTCTTCCACGGCTTCAAGATGATCTTAATCTTTTTCGAAACACTTGGGATAATCACACAATACGCACAGAGGGTTGTATGACTCCTAACCAGTTGTGGGTGATGGGAAGCATACGCAGTCCTGTACAAGAATCTGACATAGAGGGATTGAGAATACCCCACATTGACTGGGAAAGTAGTGGCCTGTGTGTTGATGGACACTCCAGCATTGTTGTGCCTCCGACAGGATGTCCCCTGACTGAGGAGCAACTGGTACTGCTCCAAGAAACTATACATCCCAAAAGACCTTCACAGACCTTTGGCTGGGACATATATTTAGCTGCACTTGATTTTTGCCAATCTGTTCTA
>TCONS_00071656
AACCTCGCAGCAACTACCTTGGATTTTTTTCAGGAAGCAGTAGAGACATTTGGCTTTCCTCTCAGGGTACGAGGTGATCAGGGGGTTGAGAATGTGGATGTGGCTCGCCTTATGTTTACCGTTCGTGGAACTGGAAAGGGCAGCTTCATTTCTGGAAAGAGCATACACAATCAGCGTATTGAGAGGCTGTGGAGAGACGTCTGGACATCAGTAACAAATGTTTACTATGATGTTTTACATGGTTTGGAAGAAGGTGGCTACCTTGACATTTCTGACCATACTCACCTCTTCTGCTGCCACTATGTATTTCTTCCACGGCTTCAAGATGATCTTAATCTTTTTCGAAACACTTGGGATAATCACACAATACGCACAGAGGGTTGTATGACTCCTAACCAGTTGTGGGTGATGGGAAGCATACGCAGTCCTGTACAAGAATCTGACATAGAGGGATTGAGAATACCCCACATTGACTGGGAAAGTAGTGGCCTGTGTGTTGATGGACACTCCAGCATTGTTGTGCCTCCGACAGGATGTCCCCTGACTGAGGAGCAACTGGTACTGCTCCAAGAAACTATACATCCCAAAAGACCTTCACAGACCTTTGGCTGGGACATATATTTAGCTGCACTTGATTTTTGCCAA

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000785 chromatin cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:0005007 fibroblast growth factor-activated receptor activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000076901

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072082 False 1386 lncRNA 0.45 6 45200851 45202970
TCONS_00071656 True 645 processed_transcript 0.46 4 45200860 45202077

Neighbor

gene id symbol gene type direction distance location
XLOC_036695 NA coding downstream 163075 45035269 ~ 45037776 (-)
XLOC_036694 timm17b coding downstream 274774 44921123 ~ 44926077 (-)
XLOC_036693 praf2 coding downstream 296128 44893628 ~ 44904723 (-)
XLOC_036692 cacna1fa coding downstream 332831 44850710 ~ 44868020 (-)
XLOC_036691 FO082780.1 coding downstream 364907 44828432 ~ 44835944 (-)
XLOC_036697 adamts13 coding upstream 23616 45226586 ~ 45279411 (-)
XLOC_036698 mak16 coding upstream 191944 45394914 ~ 45416187 (-)
XLOC_036699 CU695141.1 coding upstream 208611 45411581 ~ 45411745 (-)
XLOC_036700 ywhabb coding upstream 216015 45418985 ~ 45430942 (-)
XLOC_036701 NA coding upstream 266024 45468994 ~ 45472217 (-)
XLOC_036690 NA non-coding downstream 453883 44740102 ~ 44746968 (-)
XLOC_036687 NA non-coding downstream 716923 44483317 ~ 44483928 (-)
XLOC_036685 NA non-coding downstream 743193 44457119 ~ 44457658 (-)
XLOC_036682 CU914776.1 non-coding downstream 856109 44340504 ~ 44344742 (-)
XLOC_036716 NA non-coding upstream 1424693 46627663 ~ 46629378 (-)
XLOC_036721 NA non-coding upstream 1887141 47090111 ~ 47093938 (-)
XLOC_036724 NA non-coding upstream 1995664 47198634 ~ 47199165 (-)

Expression


Co-expression Network