XLOC_036716


Basic Information

Item Value
gene id XLOC_036716
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 46627663 ~ 46629378 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072519
AAAGATTAACCCTGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACCACATCAAGATCTGCGGTCAGTTCAAAGGATGTTTTGCATTGGACAGTTTTTTTTGGATTTGACCCTTGCTCGACCCTGACCTCACTCTTGGACTGCCCTGTtggattttcagtttattttatttatttatttatttattttttggttttgggtagatgctaataaatatttagttgtaattatttaaataatatgtttttgttaaatatgcgatttctgtgtttgttctgtctactcgtacttgtttatcttgtttctgtaattatcatttgtttatttgacccttGCCTCGCCTCTGATCTTGTTTTTGGATTgccctttatatatatttttaattattggttctggttatattgttataaaatatttgttaatt

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072519 True 430 lncRNA 0.32 2 46627663 46629378

Neighbor

gene id symbol gene type direction distance location
XLOC_036715 sult1st3 coding downstream 46215 46559332 ~ 46581448 (-)
XLOC_036714 sult1st2 coding downstream 102571 46513743 ~ 46525092 (-)
XLOC_036713 sult1st1 coding downstream 118469 46499098 ~ 46509194 (-)
XLOC_036712 sult1st9 coding downstream 141654 46471875 ~ 46486009 (-)
XLOC_036711 sult1st7 coding downstream 170430 46447061 ~ 46457233 (-)
XLOC_036717 gpr153 coding upstream 26792 46656170 ~ 46700278 (-)
XLOC_036718 acot7 coding upstream 128886 46758264 ~ 46894362 (-)
XLOC_036719 hes2.2 coding upstream 267067 46896445 ~ 46897734 (-)
XLOC_036720 hes2.1 coding upstream 291955 46921333 ~ 46926259 (-)
XLOC_036721 NA coding upstream 460733 47090111 ~ 47093938 (-)
XLOC_036701 NA non-coding downstream 1155446 45468994 ~ 45472217 (-)
XLOC_036699 CU695141.1 non-coding downstream 1215918 45411581 ~ 45411745 (-)
XLOC_036696 NA non-coding downstream 1424693 45200851 ~ 45202970 (-)
XLOC_036695 NA non-coding downstream 1589887 45035269 ~ 45037776 (-)
XLOC_036690 NA non-coding downstream 1880695 44740102 ~ 44746968 (-)
XLOC_036724 NA non-coding upstream 569256 47198634 ~ 47199165 (-)
XLOC_036726 NA non-coding upstream 627600 47256978 ~ 47258976 (-)
XLOC_036727 CR792439.2 non-coding upstream 645918 47275296 ~ 47275410 (-)
XLOC_036728 NA non-coding upstream 672993 47302371 ~ 47315226 (-)

Expression


Co-expression Network