XLOC_036719 (hes2.2)


Basic Information

Item Value
gene id XLOC_036719
gene name hes2.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 46896445 ~ 46897734 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071701
ACACACGATCTACTCACAGCAAGCTCAACATGACTCCCAGCGCCACCGCTGTATCTGCTCTGCCATGTGCGCCCCGCACCGTGGCCATGAGGAAAGAAGCAAGTGAACTGAGAAAAACCTTGAAACCCTTACTGGAAAAGAAAAGACGAGCGCGCATCAACGACAGCCTCGACCGATTAAAAGCGCTCATTCTCCCTCTCACAGGCAAAGACAACTGCCGTTATTCTAAACTGGAGAAAGCCGATATTTTGGAGATGACCGTCAGATTCCTGACTGATATCCAGACCACTCCGTCTAAAGatACCGCAGTTAGTTTCACGGAGGGATACACAACCTGCCTACAGCGCGTTTCTGCGCGCCTCCCGCAAACCAGCCTTGACGCAGAGACTCGCCACCGCGTAAACGACTTCATCCAGCGCTCGGTGATGCCCAAAACACCAGCCTGCCAGAACTGCTGTGCGCAGAGCTCCAGAATGATGTCGCAAATCCAACAAAAACTTCAGAATCTGAAATCGAGCAGCTCAAGATCCACAAATCCAAAACAAGATATTCTCAGTCGACCTGAGCCTGTGCCATTGATCACCGAAGTCTGGAGACCTTGGTAGACTCACCATACAAAAAGACTGTTGTTGCGATGAAAGCCGTTTTAAAGTTGTACATATTTGCATTTTATGTAGCCTCTTGATACATTTATTTGGTGAACACGAATCATCAAATTGCGTATAAGTATTGTATACTTGGTTTTTTTCCAGTACAGTTTAAGTAATGGAACAGACTCGttcaaattgtttttgttttcgtaAAGATCCCGCGCGTAACCGGTAAATAACGTGGTTAGATTTATTACCCTCCGTGGGCTAAATCGTCGGTGGCTCTTGAAAACGCCTTAGTAAAACCCCAAGGGTTGTCAAATGTAAGATATTTGCACTTCACACTTTCGTGTTGCTGCAGATTATTTAATGGTAAACACTCTGTGTTTTTCACTTAAAGTATCTCTATTTTTGGGATGAGCTATGTATATTATGTTTACACattaatgtgtttttatgtattatgttatattttataataaaatgtgtGGGCTACAAAA

Function

symbol description
hes2.2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in eye; gill; heart; and liver. Orthologous to human HES2 (hes family bHLH transcription factor 2).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-55 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in eye; gill; heart; and liver. Orthologous to human HES2 (hes family bHLH transcription factor 2).

Ensembl:

ensembl_id ENSDARG00000068168

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071701 True 1090 mRNA 0.44 3 46896445 46897734

Neighbor

gene id symbol gene type direction distance location
XLOC_036718 acot7 coding downstream 2083 46758264 ~ 46894362 (-)
XLOC_036717 gpr153 coding downstream 196167 46656170 ~ 46700278 (-)
XLOC_036716 NA coding downstream 267067 46627663 ~ 46629378 (-)
XLOC_036715 sult1st3 coding downstream 314997 46559332 ~ 46581448 (-)
XLOC_036714 sult1st2 coding downstream 371353 46513743 ~ 46525092 (-)
XLOC_036720 hes2.1 coding upstream 23599 46921333 ~ 46926259 (-)
XLOC_036721 NA coding upstream 192377 47090111 ~ 47093938 (-)
XLOC_036722 ybx1 coding upstream 246095 47143829 ~ 47152086 (-)
XLOC_036723 ppih coding upstream 254970 47152704 ~ 47206399 (-)
XLOC_036724 NA coding upstream 300900 47198634 ~ 47199165 (-)
XLOC_036701 NA non-coding downstream 1424228 45468994 ~ 45472217 (-)
XLOC_036699 CU695141.1 non-coding downstream 1484700 45411581 ~ 45411745 (-)
XLOC_036696 NA non-coding downstream 1693475 45200851 ~ 45202970 (-)
XLOC_036695 NA non-coding downstream 1858669 45035269 ~ 45037776 (-)
XLOC_036726 NA non-coding upstream 359244 47256978 ~ 47258976 (-)
XLOC_036727 CR792439.2 non-coding upstream 377562 47275296 ~ 47275410 (-)
XLOC_036728 NA non-coding upstream 404637 47302371 ~ 47315226 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_06831107_06831911 HES2.2 coding CI01000050 null 6831044 ~ 6832382 (+)