CI01000050_06831107_06831911 (HES2.2)


Basic Information

Item Value
gene id CI01000050_06831107_06831911
gene name HES2.2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 6831044 ~ 6832382 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_06831107_06831911.mRNA
GAATATAAACCCCGCGCGGATTCTAGATCCAGCACAGACGACCTTCCCACTGAAAACCTCAACATGACTCCTAACGCCACTGCTGTATCTGCTCTGTCTTATGCGCCCCGTACCGTGGCCATGAGAAAGGAGGCAAACGAACTGAGAAAAACCTTGAAACCCTTACTGGAAAAAAAACGACGAGCGCGCATCAACGAGAGCCTCAACCGATTAAAAGCGCTTATTCTCCCGCTCACAGGCAAAGATAATTGCCGTTATTCTAAACTGGAGAAAGCTGACATTTTGGAGATGACCGTTCGATTCCTGACTGATATTCAATACACTCCGTCTAAAGATGGTGCCGTTAGTTTTAAAGAGGGGTACATAACCTGCCTACAGCGCGTTTCAGCTCGCCTACCGCAAACCAACCTCGACACAGAAACCCGCCATCGCATCAACGAGTTCATCCAGCGTTCGATGATGCCCAAGACACCAGGCTGCCAGAACTGCTGTGCACAGAGCTCCAGAATGATGTCACAAATCCAGCAAAAACTTCTGAATTTGAAATCTAGCAGCTCAAGAATCGTAAACCCAGAAAAAAGCAACGCTGCGAGTCTCAGTCAACCTCAGCCTGTGCCACTGATCACCGATGCCAAAGTCTGGAGACCTTGGTAGATCTACCATACAAATGACTATTGTTCTGATCTTATAATGCAAGCCTTTCAGAATTGTAGCCTACATATCTGCAACCTATGTAGGCTCTTTTAAAATTTACTTGATGAATAGCCTACGAGTCATCAAATAACATATAAGTATTGTATACTTGCTTTTTCCAGTCCAGTGTATAGTAATGGAACAGACCCCACATATTTTTTGTTTTCATAAAGATCCTGCGCGTGACCTGTACATAACGTGGTTAGATTTATTACCCATTGCGGGTTAAATCGTCGGTGGCTCTTGAAAACGCCTAGTAAAACCCTAAGGGTTATTAATAGTAAAACATTTGCACCTCACACTTCAGTATCCTGGGTTGGTGCAGATTATTTAATTGTAAACACTCTGTGTTGTTCACTGAAATCTCTTTTTTGTGGGGATGTGCTATGTATTTACTTGTTTATACATGTATGTATTGTGCTACACTTTATA

Function

symbol description
hes2.2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in eye; gill; heart; and liver. Orthologous to human HES2 (hes family bHLH transcription factor 2).

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09087 HES2_6_7; hairy and enhancer of split 2/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_06831107_06831911.mRNA True 1125 mRNA 0.43 3 6831044 6832382

Neighbor

gene id symbol gene type direction distance location
CI01000050_06814252_06815192 NA coding upstream 15418 6814164 ~ 6815626 (+)
CI01000050_06704526_06704754 NA coding upstream 125158 6704526 ~ 6705886 (+)
CI01000050_06698115_06702523 YBX1 coding upstream 128521 6698115 ~ 6702523 (+)
CI01000050_06683472_06696145 PPIH coding upstream 134475 6683016 ~ 6696569 (+)
CI01000050_06610618_06631765 DPP9 coding upstream 199274 6610618 ~ 6631770 (+)
CI01000050_06833217_06853313 ACOT7 coding downstream 707 6833089 ~ 6853350 (+)
CI01000050_06890038_06920728 NA coding downstream 57519 6889901 ~ 6920987 (+)
CI01000050_06966299_06980426 NA coding downstream 133324 6964336 ~ 6980623 (+)
CI01000050_07008484_07018990 NA coding downstream 176102 7008484 ~ 7019663 (+)
CI01000050_07078547_07104277 TAS1R2.1 coding downstream 244751 7077133 ~ 7104600 (+)
G216552 NA non-coding upstream 22965 6807767 ~ 6808079 (+)
G215774 NA non-coding upstream 123122 6706010 ~ 6707922 (+)
CI01000050_06413155_06428371 NA non-coding upstream 407499 6412512 ~ 6428983 (+)
G215702 NA non-coding upstream 472214 6358573 ~ 6358830 (+)
G215728 NA non-coding upstream 551579 6279229 ~ 6279465 (+)
G216571 NA non-coding downstream 108656 6941038 ~ 6952420 (+)
G216612 NA non-coding downstream 241337 7073719 ~ 7074023 (+)
G216621 NA non-coding downstream 265191 7097573 ~ 7098289 (+)
CI01000050_07124003_07124284 NA non-coding downstream 291505 7123887 ~ 7124393 (+)
G215773 NA other upstream 165341 6661188 ~ 6665703 (+)
G215539 NA other upstream 1199841 5629610 ~ 5631203 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 1421396 5407585 ~ 5409417 (+)
CI01000050_04591548_04592778 NA other upstream 2237995 4589926 ~ 4593049 (+)
G214717 NA other upstream 2722764 4107582 ~ 4108280 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036719 hes2.2 coding NC_007119.7 CM002892.2 46896445 ~ 46897734 (-)