XLOC_036692 (cacna1fa)


Basic Information

Item Value
gene id XLOC_036692
gene name cacna1fa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44850710 ~ 44868020 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071651
ACCCTTAAGCCATTTGATATATTCATTTTACTGGCCATCTTCGCAAATTGTGTTGCTCTTGGTGTGTCCAAACCGTTTCCTGAGGATGATTCCAATGCCACCAACCACAAtctgGAACAAGTGGAGTATGTGTTTCTGGTCATTTTCACCATCGAAACTTTCACAAAGATTCTGGCATATGGTCTGGTCATGCATCCCAGTGCCTACATCCGCAGCGGGTGGAACTTGCTGGATTTTATCATTGTCATTGTTGGTCTTTTCAGTGTGATAGCTGAAATGGGAGGAGACGGTCAAAAAGCAGACAGCCATCATGCAGCCGGTAAACCAGGTGGTCTGGATGTCAAAGCCCTGAGAGCTTTTAGAGTTTTGCGACCACTTCGTCTAGTGTCTGGTGTGCCGAGTCTGCAGATTGTGTTAAACTCGATCATGAAGGCCATGGTGCCTCTGCTCCATATTGGTCTGCTCGTCATGTTTGTCATCATCATATATGCAATCATTGGTCTGGAGCTTTTTATAGGCAGGATGCACAAGACCTGCTTTTATGTAGGGACAGAACTTATGGTGGAGGATGATCCAACACCATGTGCTTTTGCCGGTCACGGACGCGTCTGTATAGGCAATAACACAGATTGTCGTGGAGGATGGGAGGGACCAAATGGAGGCATCACCAACTTTGATAATATCTTCTTTGCCATGCTCACTGTGTTCCAGTGTATTACAATGGAGGGCTGGACTGATGTCCTTTACTGGATGAACGATTCTATTGGGTTTGAGTTGCCTTGGGTTTATTTTGTGTCTCTGGTCATTTTTGGTTCATTCTTTGTCCTGAATCTTGTATTGGGTGTGCTGAGCGGCGAGTTCtctaaagagagagagaaggcaGTGTGTCGCGGTGAGCTGCAGAAGGCTCAGGAGAAACAGCAGATGGAGGAGGACATGATCGGCTACATGGACTGGCTCATTGAAGCTGAGGATATGGATGAAGATGGAAATAAGCGTGCTGTGGTGGCCAAGAAAAAGATGATGAAGAAATATGGCTGGTACAAGCATAGTGAAGATGGAGAATCTGATTCTGATTCGGAGTTTGAAGCATTCCTGGATGATGACAATGGCTGCTGTGCTTCCATAATTGAGCAACTGTACCACTTGAATGTAGTTATGAGGAAGAACTGTCGGGTTGCAGTCAAATCCACCAATTTCTACTGGCTGGTGCTACTACTAGTGTTCCTCAACACTGCTGCCAGCGCTTCTGAACATTATGGCCAGCCCAAGTGGCTCACTGACATACAGGAACGAGCAAATAAGATCCTTCTGGCTCTGTTTACGCTGGAGATGCTGATGAAGATTTACAGCTTCGGGTTTCAGATCTACTTCATGGCACTCTTCAATCGTTTTGATTGTTTCGTGGTGTGTGGTGGAATTCTGGAAACTGTGCTTGTGGAGATGGAGGTGATCCCACCCATTGGAATCTCTGTGCTGCGCTGTGTCCGTCTGCTCCGTATCTTCAAAGTCACAAGACACTGGGCTGCCCTCTCAGACCTGGTGGGCTCTTTGCTGAACTCTATGAAGGCCATTTGCTCCCTGCTGTTGCTGCTATTCCTCTTCCTCATTATTTTTGCTCTCCTGGGAATGCAGCTTTTCGGTGGAAAGTTCAACTTTGATGAGACTCAAATGAAAAGAAGCACCTTCGACTCTTTTCCATCTGCCTTACTCACCTGTTTCCAGATCCTAACAGGAGAGGACTGGAACTCCGTCATGTATGATGGCATCATGGCTTATGGTGGACCAGTGTTTCCCAAtatgattgtctgcatttactttGTCATTCTTTTCGTCTGTGACATCTTACTGAACGTCTTCTTGGCTATTGCTGTGGATAACTTGGCTGGAGATGgtggcaaaaagaaaaaagaAGAGAaaaaggaagaggaggaggaatgGGAAGATGAAGATGAAAGAGAGGAAGATGATGCTGGG
>TCONS_00071652
ATGCATCCCAGTGCCTACATCCGCAGCGGGTGGAACTTGCTGGATTTTATCATTGTCATTGTTGGTCTTTTCAGTGTGATAGCTGAAATGGGAGGAGACGGTCAAAAAGCAGACAGCCATCATGCAGCCGGTAAACCAGGTGGTCTGGATGTCAAAGCCCTGAGAGCTTTTAGAGTTTTGCGACCACTTCGTCTAGTGTCTGGTGTGCCGAGTCTGCAGATTGTGTTAAACTCGATCATGAAGGCCATGGTGCCTCTGCTCCATATTGGTCTGCTCGTCATGTTTGTCATCATCATATATGCAATCATTGGTCTGGAGCTTTTTATAGGCAGGATGCACAAGACCTGCTTTTATGTAGGGACAGAACTTATGGTGGAGGATGATCCAACACCATGTGCTTTTGCCGGTCACGGACGCGTCTGTATAGGCAATAACACAGATTGTCGTGGAGGATGGGAGGGACCAAATGGAGGCATCACCAACTTTGATAATATCTTCTTTGCCATGCTCACTGTGTTCCAGTGTATTACAATGGAGGGCTGGACTGATGTCCTTTACTGGATGAACGATTCTATTGGGTTTGAGTTGCCTTGGGTTTATTTTGTGTCTCTGGTCATTTTTGGTTCATTCTTTGTCCTGAATCTTGTATTGGGTGTGCTGAGCGGCGAGTTCtctaaagagagagagaaggcaGTGTGTCGCGGTGAGCTGCAGAAGGCTCAGGAGAAACAGCAGATGGAGGAGGACATGATCGGCTACATGGACTGGCTCATTGAAGCTGAGGATATGGATGAAGATGGAAATAAGCGTGCTGTGGTGGCCAAGAAAAAGATGATGAAGAAATATGGCTGGTACAAGCATAGTGAAGATGGAGGTACTGAGCATATTTTTATAagtaatatatatgtttga

Function

symbol description
cacna1fa Predicted to enable high voltage-gated calcium channel activity. Acts upstream of or within synapse organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in heart; photoreceptor cell; and retina. Used to study congenital stationary night blindness. Human ortholog(s) of this gene implicated in Aland Island eye disease; X-linked cone-rod dystrophy 3; congenital stationary night blindness; and congenital stationary night blindness 2A. Orthologous to human CACNA1F (calcium voltage-gated channel subunit alpha1 F).

GO:

id name namespace
GO:0070509 calcium ion import biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0050808 synapse organization biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0005262 calcium channel activity molecular_function
GO:0008331 high voltage-gated calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-7 Predicted to enable high voltage-gated calcium channel activity. Acts upstream of or within synapse organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in heart; photoreceptor cell; and retina. Used to study congenital stationary night blindness. Human ortholog(s) of this gene implicated in Aland Island eye disease; X-linked cone-rod dystrophy 3; congenital stationary night blindness; and congenital stationary night blindness 2A. Orthologous to human CACNA1F (calcium voltage-gated channel subunit alpha1 F).

Ensembl:

ensembl_id ENSDARG00000010933

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071651 False 1977 mRNA 0.46 15 44850710 44868020
TCONS_00071652 True 912 mRNA 0.46 7 44857963 44865832

Neighbor

gene id symbol gene type direction distance location
XLOC_036691 FO082780.1 coding downstream 14766 44828432 ~ 44835944 (-)
XLOC_036690 NA coding downstream 103742 44740102 ~ 44746968 (-)
XLOC_036689 bag4 coding downstream 239353 44599405 ~ 44611357 (-)
XLOC_036688 rsph14 coding downstream 263725 44566708 ~ 44586985 (-)
XLOC_036687 NA coding downstream 366782 44483317 ~ 44483928 (-)
XLOC_036693 praf2 coding upstream 25608 44893628 ~ 44904723 (-)
XLOC_036694 timm17b coding upstream 53103 44921123 ~ 44926077 (-)
XLOC_036695 NA coding upstream 167249 45035269 ~ 45037776 (-)
XLOC_036696 NA coding upstream 332831 45200851 ~ 45202970 (-)
XLOC_036697 adamts13 coding upstream 358566 45226586 ~ 45279411 (-)
XLOC_036685 NA non-coding downstream 393052 44457119 ~ 44457658 (-)
XLOC_036682 CU914776.1 non-coding downstream 505968 44340504 ~ 44344742 (-)
XLOC_036678 CR933103.1 non-coding downstream 809797 44040796 ~ 44040913 (-)
XLOC_036699 CU695141.1 non-coding upstream 543561 45411581 ~ 45411745 (-)
XLOC_036701 NA non-coding upstream 600974 45468994 ~ 45472217 (-)
XLOC_036716 NA non-coding upstream 1759643 46627663 ~ 46629378 (-)

Expression


Co-expression Network