RNA id: TCONS_00071652


Basic Information

Item Value
RNA id TCONS_00071652
length 912
RNA type mRNA
GC content 0.46
exon number 7
gene id XLOC_036692
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44850710 ~ 44868020 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCATCCCAGTGCCTACATCCGCAGCGGGTGGAACTTGCTGGATTTTATCATTGTCATTGTTGGTCTTTTCAGTGTGATAGCTGAAATGGGAGGAGACGGTCAAAAAGCAGACAGCCATCATGCAGCCGGTAAACCAGGTGGTCTGGATGTCAAAGCCCTGAGAGCTTTTAGAGTTTTGCGACCACTTCGTCTAGTGTCTGGTGTGCCGAGTCTGCAGATTGTGTTAAACTCGATCATGAAGGCCATGGTGCCTCTGCTCCATATTGGTCTGCTCGTCATGTTTGTCATCATCATATATGCAATCATTGGTCTGGAGCTTTTTATAGGCAGGATGCACAAGACCTGCTTTTATGTAGGGACAGAACTTATGGTGGAGGATGATCCAACACCATGTGCTTTTGCCGGTCACGGACGCGTCTGTATAGGCAATAACACAGATTGTCGTGGAGGATGGGAGGGACCAAATGGAGGCATCACCAACTTTGATAATATCTTCTTTGCCATGCTCACTGTGTTCCAGTGTATTACAATGGAGGGCTGGACTGATGTCCTTTACTGGATGAACGATTCTATTGGGTTTGAGTTGCCTTGGGTTTATTTTGTGTCTCTGGTCATTTTTGGTTCATTCTTTGTCCTGAATCTTGTATTGGGTGTGCTGAGCGGCGAGTTCtctaaagagagagagaaggcaGTGTGTCGCGGTGAGCTGCAGAAGGCTCAGGAGAAACAGCAGATGGAGGAGGACATGATCGGCTACATGGACTGGCTCATTGAAGCTGAGGATATGGATGAAGATGGAAATAAGCGTGCTGTGGTGGCCAAGAAAAAGATGATGAAGAAATATGGCTGGTACAAGCATAGTGAAGATGGAGGTACTGAGCATATTTTTATAagtaatatatatgtttga

Function

GO:

id name namespace
GO:0070509 calcium ion import biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0050808 synapse organization biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0005262 calcium channel activity molecular_function
GO:0008331 high voltage-gated calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-7 Predicted to enable high voltage-gated calcium channel activity. Acts upstream of or within synapse organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in heart; photoreceptor cell; and retina. Used to study congenital stationary night blindness. Human ortholog(s) of this gene implicated in Aland Island eye disease; X-linked cone-rod dystrophy 3; congenital stationary night blindness; and congenital stationary night blindness 2A. Orthologous to human CACNA1F (calcium voltage-gated channel subunit alpha1 F).

Ensembl:

ensembl_id ENSDART00000190298

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072516 lncRNA downstream 110995 44740102 ~ 44746968 (-) True XLOC_036690
TCONS_00072515 lncRNA downstream 111014 44740102 ~ 44746949 (-) False XLOC_036690
TCONS_00072514 lncRNA downstream 374035 44483317 ~ 44483928 (-) True XLOC_036687
TCONS_00072513 lncRNA downstream 400305 44457119 ~ 44457658 (-) True XLOC_036685
TCONS_00072512 lncRNA downstream 513221 44340504 ~ 44344742 (-) False XLOC_036682
TCONS_00071655 lncRNA upstream 169437 45035269 ~ 45037752 (-) False XLOC_036695
TCONS_00072517 lncRNA upstream 169437 45035269 ~ 45037776 (-) True XLOC_036695
TCONS_00072082 lncRNA upstream 335019 45200851 ~ 45202970 (-) False XLOC_036696
TCONS_00071661 lncRNA upstream 535218 45401050 ~ 45402140 (-) True XLOC_036698
TCONS_00072083 lncRNA upstream 603162 45468994 ~ 45472217 (-) True XLOC_036701
TCONS_00071650 mRNA downstream 22019 44828432 ~ 44835944 (-) True XLOC_036691
TCONS_00071649 mRNA downstream 246606 44599405 ~ 44611357 (-) True XLOC_036689
TCONS_00071648 mRNA downstream 270978 44578620 ~ 44586985 (-) True XLOC_036688
TCONS_00071647 mRNA downstream 270982 44566708 ~ 44586981 (-) False XLOC_036688
TCONS_00071646 mRNA downstream 393978 44462599 ~ 44463985 (-) True XLOC_036686
TCONS_00071653 mRNA upstream 27796 44893628 ~ 44904723 (-) True XLOC_036693
TCONS_00071654 mRNA upstream 55291 44921123 ~ 44926077 (-) True XLOC_036694
TCONS_00071657 mRNA upstream 360754 45226586 ~ 45279411 (-) False XLOC_036697
TCONS_00071658 mRNA upstream 360974 45226806 ~ 45277370 (-) True XLOC_036697
TCONS_00071659 mRNA upstream 529082 45394914 ~ 45402124 (-) False XLOC_036698
TCONS_00071642 other downstream 513221 44341541 ~ 44344742 (-) True XLOC_036682
TCONS_00071640 other downstream 516348 44340504 ~ 44341615 (-) False XLOC_036682
TCONS_00071629 other downstream 817050 44040796 ~ 44040913 (-) True XLOC_036678
TCONS_00071599 other downstream 1953321 42860031 ~ 42904642 (-) True XLOC_036668
TCONS_00071593 other downstream 2288737 42549138 ~ 42569226 (-) False XLOC_036665
TCONS_00071656 other upstream 335028 45200860 ~ 45202077 (-) True XLOC_036696
TCONS_00071662 other upstream 545749 45411581 ~ 45411745 (-) True XLOC_036699
TCONS_00071682 other upstream 1017933 45883765 ~ 45896826 (-) True XLOC_036705
TCONS_00071714 other upstream 2409464 47275296 ~ 47275410 (-) True XLOC_036727
TCONS_00071716 other upstream 2640053 47505885 ~ 47506001 (-) True XLOC_036730

Expression Profile

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