RNA id: TCONS_00072516


Basic Information

Item Value
RNA id TCONS_00072516
length 6565
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_036690
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44740102 ~ 44746968 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTAAGTTGCATTTATTTGTCTTCATACGATACATCACTGTATTAACACATATTTTCTTAATTAATTACGCTCTGAAGAATGTAGACAgtaacaatgcatttattaaatgaagtgcAGGATGTTTTATTCGATTCAGGGCAGCCCACAGAATCAATTTGCACATTGTGTTcgtctttttttaagaaatccGTTTTTTCCATGGGCGTAGATTAATAGATTTATTGGATCCTTTCTTTTAAACACACTGGAAAAGGGGTAAATCAAAATGGCACGGTAAGATCTGTTGATAAAAATCTATACACCAACGTTTCTTTTGGTCCAAACAAAGATTCTTTCAAGTTTTTTCACTTTTATGTAACATtgcggaaaaaataaataaattatatatatatatatatatactatcagAAGCACATTAAATATCAAAGGCCACAAATTCTCTGATTTGTTTTAACATCAAACTGCTTTGATTGTTAAAAACATCCTCCAGCAAAAGTTTGGTTGTTTTTCAGCATATAAGACTACAATATTCACAAGTTTGGCCTATAGAAATATATAGCAGTGCTACATTAGTtcacatacaaatgcattcagTACTGTACATTCCCAAGCTAGGTAGATTACTGTAAGAGACACAAAACCATTTTGTTCTACAACACGGGAACATGGCTGTCTTCAATAAATTGTCTATACAGAAGATATCTGTCTGAAGCCTGAGGTATGCATAATATGTCCTGTTACAATCGAAATTTTGCtctatatttacatattaatatgTAGCAGACCACCCTttcatcaaaacaaacaaaaacaagacaaacaaaccAGACTCAAATCATTATCAGGGTTAGGGATGATTGCTTGATTTCTTACTTGAAGTTTGATTGTTCATGAACTTTGAACAAGCAAGACCCTTGTTTGAGTcaaaccagtaaaaaaaaaaaaaaataggaaaggATGATTTGCCTCTGCATATGAACATTCTTTCTCCATCACGCTTTGTTCTTAAAGTTTATAAAATACTACTCtgctttatataaaatttaactGACTGGTAAAGTGACAGAACGTCTAATATACATCCACTGAGTGTTAATATTCGTATATCCtttcaaaaagaaaagaaaagaaaagaaaaagaatataaTAAGAGCATAAATGAAACCTGAAACCATACTCGTATCGTACAACACTTTAGACTAGgtaacatatacaaacatatgcAATCTTACAGACTGTATTAACAAACTCTAACAAAGAGTTAAAACAACGGGACGCTACATCGCTAGCACTTCCTGACATGCTAATAAGACAAGTGCAAAATTACGTTGCAATAGGAGTTTTCTATTCCACAACAGACAATTCCCAAGTCAATTTTTTCTATTACCGTTGCATCCCACCCTTCTTTATTGGATCTGTGCTAAAAGAGGAAATGCATAAAATGAGCAGCTACTGTGTTTTCTGCCTGATGTGGCGCAACAGTAAATAAATGATTCTACCTCAGTGAACCATTTGATTAAGCTAATAAACAGGTTTGATGGATGTCTTTTCACTGCCATGACTCACTTCTTGCTTCTGAAGATTTCAACATTGCATGCAACCTTTAAGGAAATAATAGTTGGCTTATGTATAACATACAACTTAAATAATCAGCAGTTCATggctaaaGTAAGTCCTGTCTTACAGACAAACATaggccttgttttttttttccagcttatgCTCTGATGTATCAGAGGTCACCATAGCGGAACgagtcgccaacttatccagcatgtgttttatgcagcggatgccctcccagccacaacccagtaatgggaaacacccatacactctcacattcacacacacatcattcattcattttattgttggcTTAGTCAagttattaatccagggtcgccacagcggaatgaaccgccaacttatccagcaagattttacgcagcggaagcccttccagccacaacccatctctgggaaacattcacacacacactatagccaatttcattcattcattatcgtTTTGActtcgtccctttattattctggggttgccacagcggaataaactgccaacttatccagcatatgttttacgcagcagatgcacttccagctgcaacccattactgggaaacacccatacacactcaatcacacacatacactacagccaatttagctggAGGAACAAATTgaaggaggaaaccggagcacccggaggacacccacgatTACAAGGGGGAatatgcaaacaccacacagaaacgccaactggctcagccgaggctcgaaccagcgaccttcttgctgtgaggggattgtgCTACCCCCTATGCCACCGTGTTGGCCCTTATGGCCAAATTAGTTCATCCAATCCacttataacgcatgtctttggatttgttggggaaactggagcaaccagaggaatcccatgcgaacacggggagagcatgcaaacttcacacagaaatgaggtgacagtgctaaccactgagcctccagttttttttgccttgtttatttgttttaatttttaaaagtgatttgGGATCTTTTTTGACCATTTTAAACTGGAATGTACCTGCTATCATTAGAGTAAACGTGTAGTATACTTGGTTTTCTCTGTTCCACTGTTTCTCTTGTAGTTCACAAAGCTTTCAAAGTATACTGAGGCAGATAAGCGTGAACGAATGAGTTTGACACAGTGTGTGCAAAAATGGGCTCCCTAATGACAAAAAAACTTTGTCAAGTAGACAATGCAGACTGTCGCAGAAAGACAACAGCCAAAGTAGACTTTAGGCTTAAAGCAGACAAATCTCCACTGATTACATTCAACTTGATTACCGCCCTAACTTGATCTAAAGTTCAAACAGAACTTATCAAATAAGGCCGATTCTGTGGTCAATCAGTCCAAAAAGTCAGTGTTATCCTCATAACTGAACTGTCCTTAGATAAAACTAAAATGCGCGTTCCCATCAAACATGTGCTTTATAATTGTCTCTAGTTGAACATTTTTTCACAAAAGGGAACATATTTCTGcataatgttatatttaaagctataacaaacaaaaaaaagtgactCTCAGTCAATTTTTCAACTGTGAAGACCAAAGTTGTTCAAATCACTAGGGATTAGAAGTCTCACTTAACTAATCCGAATCAAATAATGCCCAACAGTAAGGCCATCACACAAAGAATATCATTCTGATGCAATACCACAGTCGTGGTTGGGGATACTGTTTGCTTAAGCAGCCCTCTCCGCATCTGCATACTGATGATGATTCTTCTTTCTGACAGATTCAAGACAGCCTGCTATCACTGAGGAGATTTCTAAGATTCTCCTTTGAAACTGATGGTTAGCAACTACATCTACTGGTCCTGGTCACAGAAAGCATTTAaaagattagttcacccaaaaatgaaaattatgttattaattgaTTATCCCCTTGTTGTTCCAACCCTCTGGGATCTTTGGAATTTTAAGCTAAATAATTTTGTGTACAAAAATAATAACTCTTTTCAACAGATTCTTCTATCATTATATTGTGCGCTTTCATGAGCACTGTGATTGATGTGTGTACCACATGAGACTCTTCAGGCACAATAATTTGTCATATTCACCAAATAATGCACAAACACCCTCTCCTGTTCAGCAAAAAGCAATGatcagtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgctctCTATGTGTAATCAAGCATTTATTGATAGTCTGTTGCTTGTGTAGTAAAACTTGGAATAAACGTTTTAAAACTACTGTTAAACAATAACACAGACATACAGTGTTTTATATTTCTGTGATGCTAATTTAAAGAATGATCGTATACATTATATTTAGGTATTTATGCGACATATGTTGAGATTTTAAagacctttaaagggtcacggaaacaccaaaacacattttttgagctgttgacagtcttatatgtgtcccacactgctaaaaacactattaggacacatataatTTACTAAAAAGTGcacattggttgtttttgcaatatttagagcaaattcgtactttcggttagaaacaaaaaaatttcgtcacggccatgagatcttagcgtgtattccagcatgtagactggacgtctgtacctgggagatccttattacgtctctgagtgtgttgcattcattcatgagtaagacttggttcaaaccaatcagcgcgctctattgtgtatgcggtgcaacttcattaatatgcatgatagcttccaagactgtttttaacagttacagtgttcagacggcagagaccccacgttgtgttgccaagcgggagaacatgaattgtttggagatacgggtcgtcagtgttgcttttataatttgctgcagtgaaggttttgttttcattttccctctatgagagcgcagctagactcaagtgtggattacagtgcatgcgAGGCTCGACAACAATACGtgtctaaaaaaaacttttttccagagagcttttctcatctggaaatggtgaaatacgGATTTGCCGCtcatctccttttaataaagacgcagaTCCAGTTGGTGTtggttgtcctgtctctacagatttgctAAGTGAGCGACCaatggtctttgtttgtttactcaaagttagtttgtatcgtcagcagtactctttcagtgtttaaagacggaccttagtcaaatgatttctaagttaataaagtttaccgtactttaacatcactacaatattatggactgaaagatctgctgtaaatgctgctctcccgaGTGTAAACGTgtaagcaccacaaccaaacttcgTTGAGGATTTAACACATACaagaataacacacacggctttcatACCtaacttttgtttcggaacgtatctcgtttgctcagttagcgcggttcgtttggcatatgtgaacagggcaatcgctctctgttccgcgccaaagtaatcgctccgagaccgcctgagtgaggtggtctcggctcgattgaaatgaaccctggagcggttcgattgcagcgagaaagcgatctgatccgagcgcggttatatcacagtgttttatggatatgtaataggcatacggctataagAAGAGAGAATTAGGAGTATGGCgcgaagtttcgcgagtctccggatgcccgcaaacgagtgatgatctcccggtaatctctcgtctccctcccggtcctcaaaaaggcatcgtcgtgcacccttctcacccctccccaccgcatctctcctcagactcGTCGcgtgcgcgcaccctgtcaatccccaccaaaccaccacctctcctgacagctgagcgggacgctgcaaaaaaACCCCGAACACtatgaccaatgtgaggagagtttactcacacgttaCTTGTTTTAGCGCTTTTGGTCCGATTAAAAACTTtgaagtgtgaaagcgaaccactccaagagcaaagagcaacaatgtaacatttgtaatctctgtttcggaacaactgaatcgattcacaggtgtgaaagcaccctgagttactaagaaatgcggagggtttttttctctcattggccatgcggtaacaaacattgcatgaaagatGCATGCTTCCAgcaattcctcgaatcaaatatctcgtttgtcacgaggggcatgcaTAAAATTCAAGAATGAAAGatccaaactgcagttaaagtccaccatttaatgatttggcaaataatttgattactgccCAAACCGACActttcatttttatgcaaatttttatggACCCTGCCTTTTttcctcctccgacactcccccctaaacagagctggacacgcccactttcctgactttttccaaagtagaggtgttaaaaaccctgctgaaacagggaggtttcatggccctttaacagttCCAATCATGATGCCTACGCAAATCACTATGCCTGGAGTAATAAAACTTCCCTCATTGGTCATCTCAGCTCCTAAGGGTGACATAATAATCATTCTAAAAGCTGGTGGACAAGGCTGCCTCCTGCTCTTCTGTTTCTAGCAACCAGATGTTGCAGGAGAAGATGCTGAGCTAACGGTCTACTCCGACCACAAAATAAACTGTTCCAGGCCCAGTGTGGCCTCGCCTTTCCATTCCTCAGTGACCCTTGGACTCAAACTGGTTCTCTCTCATCAACTAACTTTAGCATCAATATCGACTGAACAAACTGCATCACAACTCTTTTTCGAATGTAGTCTCTTTAACagatagattattattattatctatagaAGTATTATGTAAACCAGCGATGCCTAAAGTAGGGCCCGCggcccaaagttggcccatgtaAACaattgatttggcccaccatcccacctaaaaagagagggagaatgatggttGGGGTGAATTTCCTTTTGGAGTGAGTGTCATTTCGAATTTAACGTAACCTGCGTCTTAGTTTTACACATCTGTGAGCAAATTAAAGTATGAttgactagtgtattcaacaTTGAACTTATGTTATAAAtag

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0072698 protein localization to microtubule cytoskeleton biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006996 organelle organization biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0044380 protein localization to cytoskeleton biological_process
GO:0072686 mitotic spindle cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005813 centrosome cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0140097 catalytic activity, acting on DNA molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072514 lncRNA downstream 256174 44483317 ~ 44483928 (-) True XLOC_036687
TCONS_00072513 lncRNA downstream 282444 44457119 ~ 44457658 (-) True XLOC_036685
TCONS_00072512 lncRNA downstream 395360 44340504 ~ 44344742 (-) False XLOC_036682
TCONS_00071641 lncRNA downstream 395386 44340504 ~ 44344716 (-) False XLOC_036682
TCONS_00072511 lncRNA downstream 440818 44280572 ~ 44299284 (-) True XLOC_036680
TCONS_00071655 lncRNA upstream 288301 45035269 ~ 45037752 (-) False XLOC_036695
TCONS_00072517 lncRNA upstream 288301 45035269 ~ 45037776 (-) True XLOC_036695
TCONS_00072082 lncRNA upstream 453883 45200851 ~ 45202970 (-) False XLOC_036696
TCONS_00071661 lncRNA upstream 654082 45401050 ~ 45402140 (-) True XLOC_036698
TCONS_00072083 lncRNA upstream 722026 45468994 ~ 45472217 (-) True XLOC_036701
TCONS_00071649 mRNA downstream 128745 44599405 ~ 44611357 (-) True XLOC_036689
TCONS_00071648 mRNA downstream 153117 44578620 ~ 44586985 (-) True XLOC_036688
TCONS_00071647 mRNA downstream 153121 44566708 ~ 44586981 (-) False XLOC_036688
TCONS_00071646 mRNA downstream 276117 44462599 ~ 44463985 (-) True XLOC_036686
TCONS_00071645 mRNA downstream 361692 44375487 ~ 44378410 (-) True XLOC_036684
TCONS_00071650 mRNA upstream 81464 44828432 ~ 44835944 (-) True XLOC_036691
TCONS_00071651 mRNA upstream 103742 44850710 ~ 44868020 (-) False XLOC_036692
TCONS_00071652 mRNA upstream 110995 44857963 ~ 44865832 (-) True XLOC_036692
TCONS_00071653 mRNA upstream 146660 44893628 ~ 44904723 (-) True XLOC_036693
TCONS_00071654 mRNA upstream 174155 44921123 ~ 44926077 (-) True XLOC_036694
TCONS_00071642 other downstream 395360 44341541 ~ 44344742 (-) True XLOC_036682
TCONS_00071640 other downstream 398487 44340504 ~ 44341615 (-) False XLOC_036682
TCONS_00071629 other downstream 699189 44040796 ~ 44040913 (-) True XLOC_036678
TCONS_00071599 other downstream 1835460 42860031 ~ 42904642 (-) True XLOC_036668
TCONS_00071593 other downstream 2170876 42549138 ~ 42569226 (-) False XLOC_036665
TCONS_00071656 other upstream 453892 45200860 ~ 45202077 (-) True XLOC_036696
TCONS_00071662 other upstream 664613 45411581 ~ 45411745 (-) True XLOC_036699
TCONS_00071682 other upstream 1136797 45883765 ~ 45896826 (-) True XLOC_036705
TCONS_00071714 other upstream 2528328 47275296 ~ 47275410 (-) True XLOC_036727
TCONS_00071716 other upstream 2758917 47505885 ~ 47506001 (-) True XLOC_036730