RNA id: TCONS_00072082


Basic Information

Item Value
RNA id TCONS_00072082
length 1386
lncRNA type inter_gene
GC content 0.45
exon number 6
gene id XLOC_036696
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 45200851 ~ 45202970 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTGCAAAGACTTCGTTCACGTTTGGAAACTGCTATTGGACGCCTACCCCTTGACATGGACTTCCTAGAGTTTATCTGCTCGCAAGAATTGGTCTTTTTAAGTGCTGTATCCAATTCAGTTACCATACCACAGGACATTATGGATGGCATCACAGAACTGCTTGGACTAATTCAGCTCAACCTGTCAAACGAGGAGATACGCACTCCTACTAATGTTCTTCAGGAGTCAGGGTCGATGGGACGGCCACGTCTTGTCATCTCACCAGATTTCATCACCAATCTCTTGGACATAAACTGTTCTGTTCCAAccattgctagcatgattggaGTAAGCACACGCACAGTATTTAGGCGAATGTCTGAATGTAACCTTTCTGTTCGGGCACGATATAGTACTCTCACAGATGAAGAATTAGACGATTGTGTGAAAGAATTACAACGTCACATCCCTCACTGTGGATACAGAATGATGAGAGGAGCTCTAAAGGCAAGAGGACACCTAGTCCAGTTTGAACGGGTCAGAGCTTCATTACACCGGGTTGACACACTTGGAGTCCTGTCCCGAATGACACAGATGGGCTGTGTGGTACGAAGGACCTATTCAGTCTCTAGTCCTCGGTCAATAATGCACATTGACACAAATCATAAGTTGATTCGCTACAATATAGTCATCTTTGGTGGTGTGGATGGCTTTTCACGAAAGATAATGTACCTTGGAGCTGCCACTAATAACCTCGCAGCAACTACCTTGGATTTTTTTCAGGAAGCAGTAGAGACATTTGGCTTTCCTCTCAGGGTACGAGGTGATCAGGGGGTTGAGAATGTGGATGTGGCTCGCCTTATGTTTACCGTTCGTGGAACTGGAAAGGGCAGCTTCATTTCTGGAAAGAGCATACACAATCAGCGTATTGAGAGGCTGTGGAGAGACGTCTGGACATCAGTAACAAATGTTTACTATGATGTTTTACATGGTTTGGAAGAAGGTGGCTACCTTGACATTTCTGACCATACTCACCTCTTCTGCTGCCACTATGTATTTCTTCCACGGCTTCAAGATGATCTTAATCTTTTTCGAAACACTTGGGATAATCACACAATACGCACAGAGGGTTGTATGACTCCTAACCAGTTGTGGGTGATGGGAAGCATACGCAGTCCTGTACAAGAATCTGACATAGAGGGATTGAGAATACCCCACATTGACTGGGAAAGTAGTGGCCTGTGTGTTGATGGACACTCCAGCATTGTTGTGCCTCCGACAGGATGTCCCCTGACTGAGGAGCAACTGGTACTGCTCCAAGAAACTATACATCCCAAAAGACCTTCACAGACCTTTGGCTGGGACATATATTTAGCTGCACTTGATTTTTGCCAATCTGTTCTA

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000785 chromatin cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:0005007 fibroblast growth factor-activated receptor activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072517 lncRNA downstream 163075 45035269 ~ 45037776 (-) True XLOC_036695
TCONS_00071655 lncRNA downstream 163099 45035269 ~ 45037752 (-) False XLOC_036695
TCONS_00072516 lncRNA downstream 453883 44740102 ~ 44746968 (-) True XLOC_036690
TCONS_00072515 lncRNA downstream 453902 44740102 ~ 44746949 (-) False XLOC_036690
TCONS_00072514 lncRNA downstream 716923 44483317 ~ 44483928 (-) True XLOC_036687
TCONS_00071661 lncRNA upstream 198080 45401050 ~ 45402140 (-) True XLOC_036698
TCONS_00072083 lncRNA upstream 266024 45468994 ~ 45472217 (-) True XLOC_036701
TCONS_00071670 lncRNA upstream 552673 45755643 ~ 45756396 (-) False XLOC_036703
TCONS_00072518 lncRNA upstream 552673 45755643 ~ 45760083 (-) False XLOC_036703
TCONS_00071673 lncRNA upstream 552801 45755771 ~ 45760083 (-) True XLOC_036703
TCONS_00071654 mRNA downstream 274774 44921123 ~ 44926077 (-) True XLOC_036694
TCONS_00071653 mRNA downstream 296128 44893628 ~ 44904723 (-) True XLOC_036693
TCONS_00071651 mRNA downstream 332831 44850710 ~ 44868020 (-) False XLOC_036692
TCONS_00071652 mRNA downstream 335019 44857963 ~ 44865832 (-) True XLOC_036692
TCONS_00071650 mRNA downstream 364907 44828432 ~ 44835944 (-) True XLOC_036691
TCONS_00071657 mRNA upstream 23616 45226586 ~ 45279411 (-) False XLOC_036697
TCONS_00071658 mRNA upstream 23836 45226806 ~ 45277370 (-) True XLOC_036697
TCONS_00071659 mRNA upstream 191944 45394914 ~ 45402124 (-) False XLOC_036698
TCONS_00071660 mRNA upstream 193033 45396003 ~ 45416187 (-) False XLOC_036698
TCONS_00071663 mRNA upstream 216015 45418985 ~ 45430942 (-) False XLOC_036700
TCONS_00071642 other downstream 856109 44341541 ~ 44344742 (-) True XLOC_036682
TCONS_00071640 other downstream 859236 44340504 ~ 44341615 (-) False XLOC_036682
TCONS_00071629 other downstream 1159938 44040796 ~ 44040913 (-) True XLOC_036678
TCONS_00071599 other downstream 2296209 42860031 ~ 42904642 (-) True XLOC_036668
TCONS_00071593 other downstream 2631625 42549138 ~ 42569226 (-) False XLOC_036665
TCONS_00071662 other upstream 208611 45411581 ~ 45411745 (-) True XLOC_036699
TCONS_00071682 other upstream 680795 45883765 ~ 45896826 (-) True XLOC_036705
TCONS_00071714 other upstream 2072326 47275296 ~ 47275410 (-) True XLOC_036727
TCONS_00071716 other upstream 2302915 47505885 ~ 47506001 (-) True XLOC_036730
TCONS_00071722 other upstream 2607794 47810764 ~ 47823318 (-) True XLOC_036731

Expression Profile

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