RNA id: TCONS_00071657


Basic Information

Item Value
RNA id TCONS_00071657
length 5260
RNA type mRNA
GC content 0.44
exon number 30
gene id XLOC_036697
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 45226586 ~ 45279411 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAAACATGTACCAAATGATAAGTCAACCACATCGAAGCCTGTTACCTTCTACACAGATCATGGTGTGTCAACACACATTGTCTGTAATTCATCAACTCAGAATTTCGGTGGGGCTTCTCCATGTTGATCAATAAccctttttttctgtttgatcTTTTTGAGCAGTTGTGTATGTACGGGACACTTTTAACCAACCTTTAACATTTGTCAGTCAGAATTCTCATTCTTTGCTTGGCTAAACACTATTAGTCCAGGCTTGTTCAGCTTCATTCGGCTGCTCCTTTGCTTCATGCAGCAGCCAAACATGGAAAACGTGTTCTGGCTCTTTCTAGTTCTAAGCTTGTTAACAGCTGTATTTAGTAAATCATCTGTATTGATTTCACAATGCACTCTGCAGAAGGATTTTTTAGATTCACTGAAACctcaagatttattttattattttgatactATTTCTActaaatcagTGCCTCCCTTTGAGATAGTGTGGGTGAACTGCTCAAGGAATGAGTCTATCAAAGGACTGTGGAGGTGTTTGTTTCAGACCAAAGGAGAGAGCTTTGAGCTGGTCCAACACAGTGCTAAACAAGCAGTGTCCTGTCCCACAAGTCTAGAGATGATAATAAATTCAACGGTCAGCATGGTGAAGAAAAGAGAGGATATGTGTTGCGAGCAGCTGAAGTTACTACGACCAACGCATACAAGAACACTTCTCCCTGTCTGCTATGGAAAATTACAAGGTTTGATTCAGTCAGGAGAAATGAGGCTGTATATTCGCCCAGTGCTCGAACAGCACATAGACAATCTGAAGGACCTAACTATGGATTTACCTCCCGGTGTTCCTCATTTGCTAATAACTCAGACATTACCAGTGAGGACACGTCTTAAACAGCCCAAGAGTCAGTTCAGGTTACGGAGGTCACCtctgaggtcagaggtcacataTCTGGAGCTAGCAGTGGTTGTTGGTCCTGATGTCTACGAAGTTCATCGGCAAGACACTGAGAGATACATCTTAACCAACCTCAACATTGCCTCTGAGCTTTTGAGAGATGTTACCCTCGGTGCCAATATAAGGGTTCACCTTGTCCGTATGATCATTCTTACAGAGCCAGAGCCAGACATCCAGATCTCAGAAAACATCACATCATCTTTAAAAAGTGTTTGCGAATGGGGTCAGAAGGTCAATCCTGATGCTGACAGTGATCCTTTACATGCAGATCTACTGTTATATATTACCAGGTTTGATCTGGTGTTACCCAATGGGAATAAGCTTGTGAGAGGTGTAACTCAATTTGGTGGAGTCTGTTCCACTCAATGGAACTGTGTTATTACGGAGGATACAGGCTTTGATCTTGGCATCACTATTGCTCATGAGATTGGCCACAGTTTTGGGATAAATCATGATGGAATAGATAACACATGCAGCTCTAGTGGCTTTATGATGGCATCTGATGGAGGTTATAACAGCGTCGATCTCACCTGGTCCCAATGCAGCAGGGCTCAGCTCTACAGCTTCTTCAGAGCTGGTAAGGCAGAGTGTGTTCAGGATGTGCCAGTGTTGGGTGGTTCAGTGCAGGACTGGAGGCCTGGTCTTTTCTATGGAGTGGACGATCAGTGCCGTATAGCGTTTGGCAGCTCAGCAACTGCTTGCTCTTTCACTAATGAAGACATGACAACTTGCCGTGTTCTGTCCTGCCATATTAACCCTCAGGATCATAGCTCATGCACTCGTCTTCTTGTGCCACTCCTGGATGGAACAGAGTGTGGGCCCAGTCAGTGGTGTTTAAAAGGTCGGTGTGTGTCCCCTTCTACTTCGGGCTCTTCCATGATGGTGCATGGCTCATGGTCTGCATGGTCTGACTTCTCTCCTTGCTCACGAACATGTGGAGGAGGAATCACTCACCGCAGGAGGCAATGCAACAACCCTAGgtCAGCCTTTGGTGGAACCATCTGTAAAGGACAGAATACAGAAGCTGAACTTTGTAATCTTCAGCTTTGTGATTCAACTCAGCTTGAGTTCATGGCTCGTCAGTGCTCAGCCACAGACCAGCAGCCTCTGTCAGTATCTACAGACTCTAAGTCAATGTATACCTGGATCCCTGCTATAAGCTACAGCTCAGGTGACTCTCAGTGTAAACTGATGTGTCGTTCACGTGAGCAGGACTTCATGGTGAGTCGTGGGTCTCAGTTCATTGATGGGACGCGGTGTGAATCTGATAATCCCGTACCACATGGGTCAATCTCTGCATGTCTAAGTGGAAAATGCCAGCTGTTTGGCTGCGATGGAGCATTGCATTCTGGAAAGGTGGAAGATGTGTGTGGGGTGTGTGGAGGCAATGGCTCCACATGTCACTTAATTTCAAACACTTATTCAGGTGGAAAGGCTGGAGAGTATGTGACATTCCTCACCCTTCCCCTGAATGCCTCTCAAGTTCATGTTTTCAACACACGGTCAATTTTTACACATCTTGCTGtgttattaaatgataaatatgtTGTTTCTGGAAATGGAAAGCCAGGGCTAAGCAATACATACCCCTCACCTCTGGAGAAGAGCCTTATAACGTATAAACTATACCTCACACCTGACCACCTACCTCAAACTGAAGAGCTCTATATTTCTGGACCAGTCACAGACAAAATCCACTTACAGGTGTATCGGAAATATGGACAAGAGTATGGAGACCTCACCAATCCAAATATCTCATACCAGTACTACTCAGATGATGTTATAGTGGAAATAGCTTCAAAGGGCAAATGGTCCACTACCATATCTGCCTGCTCAGTGACCTGTGGAAGAGGCATCCAGAAAATTTATCAACACTGTGTGGATCTGGTCACACTTGAACACCTGAAAGATGAGCTCTGCAGTTCACTACCTCGGTCGTCTGACCTGCTGCAGCCCTGCTTCCTGCCAGATTGCCCACCCAGATGGCAGGTCTCTGAGCCTGGTGAGTGCTCCACTGTATGTGGTCCCGGGGAGGCCCAAAGAAAAGTCTTCTGTGTCCGCTTCCATAATAAATCTTATTTGGAGGTTGACCAAAACCTGTGCTCTCAACCCAAACCCCCAGAATACGTTCCCTGTGTGGTGGATGTTTGCCCTCTCAAATGGGACACTGAAAATGAGACCCAGCTGATCCATAGAGCTTCTCATGGAATGGTTCGCTCCAAAATTGTTCCAGTTTACGTTTGGAGTCCCAGGACAGGCGAGTGCTCCAAGACTTGTGGAAATGGATCTCAGCAGGTTCAGTTCTCTTGTGTTGATCACAAATCACGTCTGGAAGTCCCAGAGACCCTTTGTGATCCAACCACCAAACCAGCACAGGACACTCAACCTTGTCGCATATCACTATGCCTCCCTATCTGGCGCTACATACAGGGGCCATGCAGTGTGTCTTGTGGAGGTGGAATAGCAAAGAGAGTCCTGTTTTGTTCACAGAGGATGGAGGAAAATGATGGAAACAATGATCTAGTGGTGGGAGAAACTGCTTGTGATTCTGTGCCCAAACCTCCAGAGGTAGTGGAATGTAATACTGAAAAATGTAAAGCCAGGTGGCAGGTGGGAGACCAGGGTGACTGTTCCGTCACTTGTGGGATGGGTGTTGCTCTCAGGAGTGTGCAGTGTGTTCAGTATGAGGGCGGTGTAGAAAGGGATGTGGAGGAGGAAAAATGTGAATCAGAAACCAAGCCTCCTGTCACTGTACCATGCTTCACACAAGTCTGTTCTTTCAACTGGGATGTGCACGACTGGAGTAAGTGTTCAGTATCATGTGGTTATGGGATCCAGTCTCGGGCTGTGTCCTGCATGGGCCCATCGAATCCATTCCCTCTTAGTCCCTTTCTTTGCCTCCACTTGCCAAAACCTATCACCATCCAGGCCTGTTATAGCCCTGACTGCTCCTCAGTCAATACATCTGAATCAAAGCCCAACAGCACTTACATCCAGTCAACTCTCCAAAGTATTGAGGGGATGTGGAAAAGTCCAAACATGCAAACCACACCAGCTCCAGCAGTCAGACGTATCAAGATGAAGAAGAGTTTCCCAACCATTGTTCCTACAGCAGACATGATGACGAGCACTATGAGCGTGCCAACAGAAACACCACAGACCAGTATCTGTGGGCAACTCCTGCTTCAAGACTCAGGAAATATTGATCTCCGCAATGTCACTGAGAGGAGATGCATATTTGCTATTGGCCGACCTCTTGATGAGGTTATTCAAATCAGAATTATTTCCAGTACCCTTAACTGCCAGCAAAAGGAGAATATAGCCCTGTATGACAGACTTGTCCTTATGCGTCTTTGTGAGAGGATGACTGGTAAAATGGTCAAATCACGAACAAATGTTCTTTTGGTACGCCAAAACCGTCTCACCTCTGGCAATGGAGTGGTACTATTTTATCAAAGTGTAAAGACGAATAAAGGCTACAATAGAGTGTGTGATGTTCAACTGTTTGCTCCTTCCGGACTTATTGAGAATCCGATCAAGAGTCCAGCCACTTACCCCTCTAACACCCAGAGCTGTCGTGTGTTCATTGATGCTCCTCCTGCTTTGAGAGTTCAAATCAGAGCACTTTCTGTTCTCAACAATACAGACACAAACTCAACATACATATTGATTCGAGATGTGGATGCTTTAAAGACAACCATATTTAGAGGAACACAGCTCTTCCTGTGGAGATCTTCAGGAAGCAGGGCTGAAGTGGAATTTCATGGGGAGTATCAGCAAATCAAAGGAATGTTTAGAGCAGAGTATTTGCATATTAACCCTTCTGAAGAATAACTAGCGTACTTTGTATGCATGCTAGTTCAACACGaatttgaaatttaaaaataagtatagtAGTTTAACTAGTTTAGCATAAAAGAATCTGAGGAGAAGCAGTCTGAAATGGTCTGTTGTTCTGTCATATAATTGATAAACAAAAAATCATACCAATTGCTTTTCTATATTTATTGTTATGTGTTTTTCACCTTTCTAAATTGACAATCATATGTGCCATGTCTTCTTCTAATTTAACACCACAAcgaaataaatacaaatcatgAAGAGTGTTGATGTTGTGTATAGGTTTTGTCCTCCCACTGACACCTTACACAAGTGCCACTTTACAGGCTCAAAACATTTATGAAAACTATGGCTGCATTTACAGAGTACAACCCTCAGTGctaggaaacacccatttacTCTGTCATTCACACATTACTGGAAATTAAGTTTATCTAATTAGCCCTTCACAATATACTCTTCTGGG

Function

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-070814-7 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Human ortholog(s) of this gene implicated in thrombotic thrombocytopenic purpura. Orthologous to human ADAMTS13 (ADAM metallopeptidase with thrombospondin type 1 motif 13).

Ensembl:

ensembl_id ENSDART00000175207

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072082 lncRNA downstream 23616 45200851 ~ 45202970 (-) False XLOC_036696
TCONS_00072517 lncRNA downstream 188810 45035269 ~ 45037776 (-) True XLOC_036695
TCONS_00071655 lncRNA downstream 188834 45035269 ~ 45037752 (-) False XLOC_036695
TCONS_00072516 lncRNA downstream 479618 44740102 ~ 44746968 (-) True XLOC_036690
TCONS_00072515 lncRNA downstream 479637 44740102 ~ 44746949 (-) False XLOC_036690
TCONS_00071661 lncRNA upstream 121639 45401050 ~ 45402140 (-) True XLOC_036698
TCONS_00072083 lncRNA upstream 189583 45468994 ~ 45472217 (-) True XLOC_036701
TCONS_00071670 lncRNA upstream 476232 45755643 ~ 45756396 (-) False XLOC_036703
TCONS_00072518 lncRNA upstream 476232 45755643 ~ 45760083 (-) False XLOC_036703
TCONS_00071673 lncRNA upstream 476360 45755771 ~ 45760083 (-) True XLOC_036703
TCONS_00071654 mRNA downstream 300509 44921123 ~ 44926077 (-) True XLOC_036694
TCONS_00071653 mRNA downstream 321863 44893628 ~ 44904723 (-) True XLOC_036693
TCONS_00071651 mRNA downstream 358566 44850710 ~ 44868020 (-) False XLOC_036692
TCONS_00071652 mRNA downstream 360754 44857963 ~ 44865832 (-) True XLOC_036692
TCONS_00071650 mRNA downstream 390642 44828432 ~ 44835944 (-) True XLOC_036691
TCONS_00071659 mRNA upstream 115503 45394914 ~ 45402124 (-) False XLOC_036698
TCONS_00071660 mRNA upstream 116592 45396003 ~ 45416187 (-) False XLOC_036698
TCONS_00071663 mRNA upstream 139574 45418985 ~ 45430942 (-) False XLOC_036700
TCONS_00071664 mRNA upstream 139945 45419356 ~ 45430817 (-) True XLOC_036700
TCONS_00071665 mRNA upstream 429156 45708567 ~ 45726089 (-) False XLOC_036702
TCONS_00071656 other downstream 24509 45200860 ~ 45202077 (-) True XLOC_036696
TCONS_00071642 other downstream 881844 44341541 ~ 44344742 (-) True XLOC_036682
TCONS_00071640 other downstream 884971 44340504 ~ 44341615 (-) False XLOC_036682
TCONS_00071629 other downstream 1185673 44040796 ~ 44040913 (-) True XLOC_036678
TCONS_00071599 other downstream 2321944 42860031 ~ 42904642 (-) True XLOC_036668
TCONS_00071662 other upstream 132170 45411581 ~ 45411745 (-) True XLOC_036699
TCONS_00071682 other upstream 604354 45883765 ~ 45896826 (-) True XLOC_036705
TCONS_00071714 other upstream 1995885 47275296 ~ 47275410 (-) True XLOC_036727
TCONS_00071716 other upstream 2226474 47505885 ~ 47506001 (-) True XLOC_036730
TCONS_00071722 other upstream 2531353 47810764 ~ 47823318 (-) True XLOC_036731

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000146_00826643_00858709.mRNA True 4597 mRNA 0.48 28 CI01000146 826353 ~ 858709 (-)