XLOC_036698 (mak16)


Basic Information

Item Value
gene id XLOC_036698
gene name mak16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 45394914 ~ 45416187 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071659
TGGCTGCCATCTGTAACTTCCATGTGCTGTTTTATTATATCACAAAATAACTGCTCTCATCATTTTTCTTATCCGTAAAGTTAATTTCATTGTATTGGATTAACACTGACATTTACGTACAGAGAGCCGGTTGTTCAAAGAAGCCGTCAGAATGCAACACGACGACgttATATGGGACCTTATCGGCAATAAGAGTTTTTGTTCCTATAAAGTTAAAACGAAAACTCAGCAGTTCTGCCGAAATGAATACAACATCACAGGCCTTTGCAACAGATCATCATGCCCTCTTGCTAATAGCCAGTATGCAACTATAAGAGAAGAAAAAGGCCAGTGTTTTCTCTACATGAAAGTTATTGAGAGAGCAGCATTTCCTTCTCGCATGTGGGAGAAGGTGAAACTTGACAGAAACTATGCAAAGGCTCTGGAACAGATCGACGAGAACCTCATCTACTGGCCACGGTTTATCCGTCACAAGTGTAAACAGCGATTGACCAAGATCACCCAGTATCTCATTCGAATCCGCAAGCTCACGCTAAAACGACAGAGAAAACTGGTTCCACTCAGTAGAAAAGTAGAGAGACGAGAAAAGAGGAGAGAGGAAAAAGCTCTTATTGCCGCTCAGCTGGAAAATGCCATCGAAAAAGAGCTGCTAGATCGGCTAAAACAGGGAACATATGGAGACATTTACAACTTCCCCATCAATGCCTTCGACAAAGCTATGGAAAAACAGGATGAAGAAAGTGAatctgaggaggaggaggaggaagaagaggaagacGAAGAGGAGTCTGGAACGAGAGAATTTATTGCTGAGGATGAGTTTGAAGAGAGTGATCTCAGTGATTTTGAGGAATTGAACAACCTGAAGGACAGCAGTGACGAAGAAGTGAACAATGAAGAGGAATCCAGTGAGGAGTCAGAGGAAGAGtctgaggaggaggaggtgaagaGCAAGGCCAAATCTAAAGGAAAAGCTCCACTCAAAGGCCCAAGCAGGAAAAAACGAGCCTATGTGGAGATCGAGTATGAACAGGAGACAGAACCAGCTCAGAAAAGCAAGGCCACATAGAGGCTCTGTGGAACGTTTCCAAATCATGGAATGTGATCATTTACCAGACACTTGGATTCAGTTAGAACGTACACTGGTGTGTGTTCAAACACTCCCATTAAAAGCTTTCTTGtgggaatcttttttttttttttttttacattgaattaTGCTGATGCCAAGCATAAGTGCTGTTTTAAGTATACATTTGGATTAACTTGAtccatgtaaaaaataataaaattaagttcATATGACATGCAGGGTTTACCAAGTAGTGGCTGGTGTTGTAAAAGGGTGAACGTTAAATATGTTTTGTATATGAATACATGGATTTGTATTGACGTTAACAGTTGATAATCAAGCTGCAAGGAGTAAAATTATCTTTAGTAAAAATAGTTATTGAAATTAATCTATATAAACACTAGTATCAATGCAGAGATAAATGGGATAGAGGAacggtaaatgttttatttttggtcGGATGTCTTTTTAATCAGGAGCCTACTGTCTTAGCCATAGCTTAcctcatttaataataatgtaaacaacAATGGTCATATTTTAGGTTTTATGCTTATTAAATTGATTGAAAGAATCTCAAGcaacttaaacaaaaaaaaacaagtcaggtttataaactttatttaaaaaacaacaacaaccctgCCTCGTTTAGTACTTGCATTCATAAAATGGAGTAAATAGATTCCCGTTCTATCAAGCCAACTTCACCTACATCGAGGGGAAAAGTGGCAAATGGTCAAAGCTTACGGACAAGATGCTGCAAGGACATTTTGGATACACTTGAAGACTGGGTCAGGGACACAACTGCTGTCTACCTCTCTGAGAAGAGCCTGGGGGGGAAACGGGAAATGTTATAATGGCGTTAAACAGTGTGCAGTAACAAGATCATTTTACAGGTATCTGAATAAAAAGAACACTGGGTTGTAAATCTG
>TCONS_00071660
ATTATGTGGCGCACCTGATAATTTGTTTTCACGTGTCAACAGTTATTTCTACCGCCGAACCTGAACAAAGAGAGCCGGTTGTTCAAAGAAGCCGTCAGAATGCAACACGACGACgttATATGGGACCTTATCGGCAATAAGAGTTTTTGTTCCTATAAAGTTAAAACGAAAACTCAGCAGTTCTGCCGAAATGAATACAACATCACAGGCCTTTGCAACAGATCATCATGCCCTCTTGCTAATAGCCAGTATGCAACTATAAGAGAAGAAAAAGGCCAGTGTTTTCTCTACATGAAAGTTATTGAGAGAGCAGCATTTCCTTCTCGCATGTGGGAGAAGGTGAAACTTGACAGAAACTATGCAAAGGCTCTGGAACAGATCGACGAGAACCTCATCTACTGGCCACGGTTTATCCGTCACAAGTGTAAACAGCGATTGACCAAGATCACCCAGTATCTCATTCGAATCCGCAAGCTCACGCTAAAACGACAGAGAAAACTGGTTCCACTCAGTAGAAAAGTAGAGAGACGAGAAAAGAGGAGAGAGGAAAAAGCTCTTATTGCCGCTCAGCTGGAAAATGCCATCGAAAAAGAGCTGCTAGATCGGCTAAAACAGGGAACATATGGAGACATTTACAACTTCCCCATCAATGCCTTCGACAAAGCTATGGAAAAACAGGATGAAGAAAGTGAatctgaggaggaggaggaggaagaagaggaagacGAAGAGGAGTCTGGAACGAGAGAATTTATTGCTGAGGATGAGTTTGAAGAGAGTGATCTCAGTGATTTTGAGGAATTGAACAACCTGAAGGACAGCAGTGACGAAGAAGTGAACAATGAAGAGGAATCCAGTGAGGAGTC
>TCONS_00071661
TCATGTGGTGTTAATATGGCTGCCATCTGTAACTTCCATGTGCTGTTTTATTATATCACAAAATAACTGCTCTCATCATTTTTCTTATCCGTAAAGTTAATTTCATTGTATTGGATTAACACTGACATTTACGTACAGAGAGCCGGTTGTTCAAAGAAGCCGTCAGAATGCAACACGACGACgttATATGGGACCTTATCGGCAATAAGAGTTTTTGTTCCTATAAAGTTAAAACGAAAACTCAGCAGTTCTGCCGAAATGAATACAACATCACAGGCCTTTGCAACAGATCATCATGCCCTCTTGCTAATAGCCAGTATGCAACTATAAGAGAAGAAAAAGGTAATGAATTCTGTAAAAATTCTACCTATTTCTTGAATGTCTATTTGATATTACAAGTCTTCTGTTTTGTCAGGCCAGTGTTTTCTCTACATGAAAGTTATTGAGA

Function

symbol description
mak16 Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Orthologous to human MAK16 (MAK16 homolog).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0000460 maturation of 5.8S rRNA biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-020419-35 Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Orthologous to human MAK16 (MAK16 homolog).

Ensembl:

ensembl_id ENSDARG00000003527

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071659 False 2007 mRNA 0.39 10 45394914 45402124
TCONS_00071660 False 866 mRNA 0.44 11 45396003 45416187
TCONS_00071661 True 448 lncRNA 0.36 3 45401050 45402140

Neighbor

gene id symbol gene type direction distance location
XLOC_036697 adamts13 coding downstream 115503 45226586 ~ 45279411 (-)
XLOC_036696 NA coding downstream 191944 45200851 ~ 45202970 (-)
XLOC_036695 NA coding downstream 357138 45035269 ~ 45037776 (-)
XLOC_036694 timm17b coding downstream 468837 44921123 ~ 44926077 (-)
XLOC_036693 praf2 coding downstream 490191 44893628 ~ 44904723 (-)
XLOC_036700 ywhabb coding upstream 2798 45418985 ~ 45430942 (-)
XLOC_036701 NA coding upstream 52807 45468994 ~ 45472217 (-)
XLOC_036702 SLC18A1 coding upstream 292380 45708567 ~ 45729758 (-)
XLOC_036703 ppiaa coding upstream 338684 45754871 ~ 45760087 (-)
XLOC_036704 ogdha coding upstream 346297 45762484 ~ 45838481 (-)
XLOC_036690 NA non-coding downstream 647946 44740102 ~ 44746968 (-)
XLOC_036687 NA non-coding downstream 910986 44483317 ~ 44483928 (-)
XLOC_036685 NA non-coding downstream 937256 44457119 ~ 44457658 (-)
XLOC_036716 NA non-coding upstream 1211476 46627663 ~ 46629378 (-)
XLOC_036721 NA non-coding upstream 1673924 47090111 ~ 47093938 (-)
XLOC_036724 NA non-coding upstream 1782447 47198634 ~ 47199165 (-)
XLOC_036726 NA non-coding upstream 1840791 47256978 ~ 47258976 (-)

Expression


Co-expression Network