RNA id: TCONS_00071641


Basic Information

Item Value
RNA id TCONS_00071641
length 592
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_036682
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44340504 ~ 44344742 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tacagtttggtctcttctcatgtctccgggtcgacctgctgaactttgctgaatctggtgcctaatataggggaaatcttacagatctgggggctcgtccgggatacatCTGATCAGATACTTTGGGGGCCCCCACATCAGCTAGCACCTCCACGCAGCATAACTACTAGAAGGATAAGCATGAAGTGGCTATGGACATTGGGACTGTTTCTCTTTCTTGTTGCTCAAGCTAATGCAGCCAGGCTGAAACGCTGGACACATGATCATGAATTTGGATGGGCAGAGGATGGGGCTGACAATCCAATTGAAATAATATGTGGTATCAATATGTGAAAGTTTTAGCTAGGTCATATAATGTATCTGGTTGTTATGTATGtgtgtgcgcatcggAGGTCTGAAGGTCAACGTCTGGTTTCAGTCTTGCAGGTGTTAGAAATATGAGACCATGGTCTGGTTTCATTTCGCAGCTTCACCCACGCTGGAAAATTCCACTATGCTCAGATATGAAATATGCTGATTCATGTTAAGAGAAAATGCTGTATGACTAGCCCATATTTGGAGTGCCTTTCTGCTATCAGCCCCTGTGTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072511 lncRNA downstream 41220 44280572 ~ 44299284 (-) True XLOC_036680
TCONS_00072510 lncRNA downstream 41257 44232839 ~ 44299247 (-) False XLOC_036680
TCONS_00072509 lncRNA downstream 101877 44232839 ~ 44238627 (-) False XLOC_036680
TCONS_00071636 lncRNA downstream 105992 44232839 ~ 44234512 (-) False XLOC_036680
TCONS_00071620 lncRNA downstream 400327 43934595 ~ 43940177 (-) True XLOC_036676
TCONS_00072513 lncRNA upstream 112403 44457119 ~ 44457658 (-) True XLOC_036685
TCONS_00072514 lncRNA upstream 138601 44483317 ~ 44483928 (-) True XLOC_036687
TCONS_00072515 lncRNA upstream 395386 44740102 ~ 44746949 (-) False XLOC_036690
TCONS_00072516 lncRNA upstream 395386 44740102 ~ 44746968 (-) True XLOC_036690
TCONS_00071655 lncRNA upstream 690553 45035269 ~ 45037752 (-) False XLOC_036695
TCONS_00071638 mRNA downstream 41257 44234477 ~ 44299247 (-) False XLOC_036680
TCONS_00071639 mRNA downstream 41540 44295983 ~ 44298964 (-) True XLOC_036681
TCONS_00071633 mRNA downstream 101871 44224693 ~ 44238633 (-) False XLOC_036680
TCONS_00071635 mRNA downstream 101871 44230168 ~ 44238633 (-) False XLOC_036680
TCONS_00071637 mRNA downstream 101877 44233770 ~ 44238627 (-) False XLOC_036680
TCONS_00071643 mRNA upstream 17736 44362452 ~ 44363596 (-) True XLOC_036683
TCONS_00071644 mRNA upstream 29048 44373764 ~ 44378391 (-) False XLOC_036684
TCONS_00071645 mRNA upstream 30771 44375487 ~ 44378410 (-) True XLOC_036684
TCONS_00071646 mRNA upstream 117883 44462599 ~ 44463985 (-) True XLOC_036686
TCONS_00071647 mRNA upstream 221992 44566708 ~ 44586981 (-) False XLOC_036688
TCONS_00071629 other downstream 299591 44040796 ~ 44040913 (-) True XLOC_036678
TCONS_00071599 other downstream 1435862 42860031 ~ 42904642 (-) True XLOC_036668
TCONS_00071593 other downstream 1771278 42549138 ~ 42569226 (-) False XLOC_036665
TCONS_00071589 other downstream 1831998 42508390 ~ 42508506 (-) True XLOC_036664
TCONS_00071588 other downstream 1988187 42352201 ~ 42352317 (-) True XLOC_036663
TCONS_00071656 other upstream 856144 45200860 ~ 45202077 (-) True XLOC_036696
TCONS_00071662 other upstream 1066865 45411581 ~ 45411745 (-) True XLOC_036699
TCONS_00071682 other upstream 1539049 45883765 ~ 45896826 (-) True XLOC_036705
TCONS_00071714 other upstream 2930580 47275296 ~ 47275410 (-) True XLOC_036727
TCONS_00071716 other upstream 3161169 47505885 ~ 47506001 (-) True XLOC_036730

Expression Profile

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