RNA id: TCONS_00071639


Basic Information

Item Value
RNA id TCONS_00071639
length 2982
RNA type mRNA
GC content 0.46
exon number 1
gene id XLOC_036681
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44295983 ~ 44298964 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGGAGGAGCTCAGACACAGACAGCGCGCGAGGCAGAGAGCTGCTCTTCAGGGAGAAACGGACACGAGCTAAAGTGAATACTCACACGTTTACGGAGAggattcgttcattcatttaacaTGACTGCGATGTAACGACACCGTGCCTTCCGTTTGGTCAGTTTGGATACACTTTGcggaggatgtgtgtgtgtgtttaaagtagCGCGGGAGCTATTTGAAAAGTAAGTGTACTTTTGTGAAGAAACAGACCGTCAGCGATGTTTCACAGAACTGGAGAGATTTAAAGTACGGGTATATCATCTGTGGACTGGGAATTGAACATTAACAGCGCGAAACCTCTCAAAATAGTGaaagtttttttcattttttttcatctgtttgAAGATTTTTACGCACTAAATTCTCCTGTTACTCTTTTTTGGGatataataactttttaaattaaaactaaaacaacaatgaAGAAACTTTTCTAGTGAAACAAAGCTTTTCGGAGAACAATATCTGCTATACATGAGTTAATATTGAAAGACAATGTTTGCTGCCGGTGTCGGACTCAGCCTTGGGCTGCTGTGCTTTGCTGGGTTTTGTTCTGCGATCAGTTCCATCGACCCGGACCGGCCAGGTGAAGGAAGATGCCAGGAGATTGCCATTCCTCTCTGTAAGGACATTGGCTACAACTTAACAGTTATGCCGAACTTAATGGGACATGAAGATCAAAATGAGGCAGCCATAAAGCTGCATGAGTTTGCTCCGCTGATTGAGTTCGGCTGTCACAGCCATCTGAAGTTTTTCTTGTGCTCACTCTACGCACCCATGTGCACAGAACAGGTATCCACACCTATCCCAGCATGCCGAGTGATGTGCGAGCAGGCAAGGCAGAAGTGTTCTCCCATCATGGAGCAGTTCAACTTTCACTGGCCTGAGTCGCTGGACTGTTCCAGACTGCCAAATAAAAACGACCCCAATTACCTCTGTATGGAAGCTCCCAACAATGGCACAGATGAGCCCCCAAAGGGCTCCCACACTCAGTCGCCAGACTCCCGACCCCCTCGGCCAGGTAACAGCCAAGAACTGCCTATTAAAGAGAGGGTCGGTAAGACCACATGCAGCAACCCTGGAAAGTTTCATTATGTGCAAAAGAGTGAGTCCTGTGCCCCCAAGTGTTACTCCAACGTAGATGTGTACTGGAGCCAGGGCGACAAACGCTTCTCCATGGTGTGGATTGCTATCTGGTCCATACTGTGCTTCATCTCTAGTGCCTTTACTGTCCTCACCTTTCTCATTGATCCCCAGCGCTTTAAGTACCCTGAGCGGCCCATCATCTTCCTTTCTATGTCCTACTGTGTCTACTCTGTGGGCTTTCTTGTAAGACTTTTTGTGGGGGTGGAAAATGTGGCCTGTGATCGTGACACTGGAGTTCAGTACATCATCCAGGAAGGCCTGGAAAGCACTGGCTGCACCATAGTCTTCCTCATTCTTTACTACTTCGGGATGGCCAGTTCCCTGTGGTGGGTCATTCTTACTCTCACATGGTTCCTCGCAGCTGGAAAAAAATGGGGTCACGAGGCCATCGAAGCCAACAGCAGCTACTTCCATCTGGCGGCATGGGCTATACCAGCCATCAAGACCATCATGATCCTGGTTATGAGGAAGGTAGCAGGAGACGAGCTCACTGGAGTCTGCTATGTAGGCAGCATGGATGTCAAAGCCTTGACTGGTTTTGTTCTTATTCCTCTCTCTTGCTACCTCATCATCGGCACTTCATTTTTACTCTCAGGGTTTGTTGCACTCTTTCACATCCGTAAGGTCATGAAGACCGAGGGAGAGAATACGGATAAGCTGGAGAAGCTGATGGTTAGGATCGGCGTGTTCTCTGTGCTCTACACAGTCCCCGCCACTTGCGTCATCGCCTGCTATTTTTACGAGCGTCTCAACATGGATTATTGGAAGATTCTAGCAGGAGAACAGAAGTGCGCCGATGACGGTAAAAGTGGGGAAGAGTGCGTGATGAAGAGCTCCATCCCTGCCGTAGAGATTTTCATGGTAAAGATTTTCATGTTGTTGGTGGTGGGCATCACCAGCGGCATGTGGATCTGGACCTCTAAAACACTGCAGTCGTGGCAGAATGTTTTCAGTCGCAAACTTAAGAAGAAGACAAGGAGGAAGGCTGCATGTGTTTTCACAGGAAGTGGACCTTACCTCAAGCCTCATCCTGCACTAAAAGGACACAAAACTAAGTACGAACCAGCAGGTCCTCCTGCAACTTGTGTATGAGCTGGGTCTCTACGCACACGCAAACAGCCAGAAATGAAAACTCTGAACTTTAACAAACTGCTTTATAAAAGGACAAGCCAGCAAAGAACTCCACAATTCtcgtatttattatatgcaaactTCAGGTGCAGCATCCCCAACAAGTTTGTTCAGTTCCTAGTGTTTGTGCTGCATCTGAAACTTTGCAGACTGGAATTACAAAACAAAGTAAAAGGGAGTGAGTCCCTTGTGCTGTCATTGGGATGCCTATATCTTGTcatgtgcaatagtttgtttccCTTAGTGACAGAGAAAAAGGGACTCTGTAGAGCTGTGATTAAAGACAATGAAAGGACTCGACAAACAATGGGTGTGAATGGCTGGAGGAAAAGCAGCTCCTCTGTGGTGTAGTCGTGTGGCTTTTCTATGGAAATGAAGGCTGTGTCATACACAACTGCATTGACATTGGAGTGCAGCTGCTCAATAAGGCTTTGGCAGAGaatgaactgcctatttttagGCCTTTAAATGGAACAAAGTGAATCTTTAAGCACTAAATATTGCCAACACAATGAGAAAAACCTTGTTATTTGAGTGGTTTTGTACAGTGAGATCATGTCCCTGGTTTGTTTTGTTACACCAAGCTCTTTTTAATGTCCATACATTTGTGTATATTTCTAAAGGTCCATATtttataagaataaataaaacaatttagtttta

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0035567 non-canonical Wnt signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0090504 epiboly biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-220 Enables Wnt-activated receptor activity. Acts upstream of or within Wnt signaling pathway and epiboly. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blastoderm; central nervous system; forerunner cell group; margin; and tail bud. Orthologous to human FZD10 (frizzled class receptor 10).

Ensembl:

ensembl_id ENSDART00000098520

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072509 lncRNA downstream 57356 44232839 ~ 44238627 (-) False XLOC_036680
TCONS_00071636 lncRNA downstream 61471 44232839 ~ 44234512 (-) False XLOC_036680
TCONS_00071620 lncRNA downstream 355806 43934595 ~ 43940177 (-) True XLOC_036676
TCONS_00071614 lncRNA downstream 549619 43745772 ~ 43746364 (-) False XLOC_036673
TCONS_00071610 lncRNA downstream 600270 43695310 ~ 43695713 (-) False XLOC_036672
TCONS_00071641 lncRNA upstream 41540 44340504 ~ 44344716 (-) False XLOC_036682
TCONS_00072512 lncRNA upstream 41540 44340504 ~ 44344742 (-) False XLOC_036682
TCONS_00072513 lncRNA upstream 158155 44457119 ~ 44457658 (-) True XLOC_036685
TCONS_00072514 lncRNA upstream 184353 44483317 ~ 44483928 (-) True XLOC_036687
TCONS_00072515 lncRNA upstream 441138 44740102 ~ 44746949 (-) False XLOC_036690
TCONS_00071633 mRNA downstream 57350 44224693 ~ 44238633 (-) False XLOC_036680
TCONS_00071635 mRNA downstream 57350 44230168 ~ 44238633 (-) False XLOC_036680
TCONS_00071637 mRNA downstream 57356 44233770 ~ 44238627 (-) False XLOC_036680
TCONS_00071634 mRNA downstream 57457 44224709 ~ 44238526 (-) False XLOC_036680
TCONS_00071630 mRNA downstream 71785 44211374 ~ 44224198 (-) False XLOC_036679
TCONS_00071643 mRNA upstream 63488 44362452 ~ 44363596 (-) True XLOC_036683
TCONS_00071644 mRNA upstream 74800 44373764 ~ 44378391 (-) False XLOC_036684
TCONS_00071645 mRNA upstream 76523 44375487 ~ 44378410 (-) True XLOC_036684
TCONS_00071646 mRNA upstream 163635 44462599 ~ 44463985 (-) True XLOC_036686
TCONS_00071647 mRNA upstream 267744 44566708 ~ 44586981 (-) False XLOC_036688
TCONS_00071629 other downstream 255070 44040796 ~ 44040913 (-) True XLOC_036678
TCONS_00071599 other downstream 1391341 42860031 ~ 42904642 (-) True XLOC_036668
TCONS_00071593 other downstream 1726757 42549138 ~ 42569226 (-) False XLOC_036665
TCONS_00071589 other downstream 1787477 42508390 ~ 42508506 (-) True XLOC_036664
TCONS_00071588 other downstream 1943666 42352201 ~ 42352317 (-) True XLOC_036663
TCONS_00071640 other upstream 41540 44340504 ~ 44341615 (-) False XLOC_036682
TCONS_00071642 other upstream 42577 44341541 ~ 44344742 (-) True XLOC_036682
TCONS_00071656 other upstream 901896 45200860 ~ 45202077 (-) True XLOC_036696
TCONS_00071662 other upstream 1112617 45411581 ~ 45411745 (-) True XLOC_036699
TCONS_00071682 other upstream 1584801 45883765 ~ 45896826 (-) True XLOC_036705

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000053_03744819_03746561.mRNA True 4109 mRNA 0.43 1 CI01000053 3743145 ~ 3747253 (+)