RNA id: TCONS_00071630


Basic Information

Item Value
RNA id TCONS_00071630
length 1499
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_036679
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44211374 ~ 44224198 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACCTACTGAACTAAGGATTTCGATTGGCCCAATCTGGCAAGCGCTTAGAAAAGTAACAGACAACGCGTGAAAACGTCATCTTCTTTCTACCGTGTCGCGATTAAAATTGACACCAAAATAATAAAAGTGCGGATGCCCATAGCCTTTAAACTGAAACACAGCGTAAAAGGTAAAGAAAGAAACCCAAATAAAACATTGCCTGACAGCGCCATAATGTTACCGCCCTGTTCCGAGTTAGCTGCGCCCACAGTGTAATTGAGACGCGCAGAGAAGAACCGTCAGCTGGAGACAGGCGGAGAACTAAGGATGGCAACCAAACAAACACCTCATGACTGGACATTTCTTtcaaaAACTTAAAATGGACTTTAATTCGGACGGACAGCAACGGACGTGATCGATAAACAGGATAATCGACGTCTCATCGACATTGTTATGAGGGACCGACTGGCGGATTTGAATGTGGCAAGCATAATGCCAGTGAAGATGGGGGTGTCGCTGTGTCCATGGAGAGAAATGACTTCATGCAAGACTTTTTTCAAAAGGTAgttgaagAGGTCAGACGGGTCATTGAAAAGATCTCCTCCCTAGTGGATGAGGTGAAGAAGAAATATAGTGTGATCCTTTCGGCCCCCAATCCTGATGAGAAAACAAAAGAAGAACTAGAACAACTCACGGTGGAAATCAAAAAACATGCCAACTATGTACAGAAAAGCCTCAAATcaaTGCACCAGAGTCTGCCTTCAGATGAGCAGGTCAATCAAGCCTCAGTGGATGCACGCATTCAAAAAACACAGTATACTAATTTATCGCATAAATTTGTGGAAGTAATGACGCAATACAATGAAGCTCAAGTGTCCTTCAGAGAGAAAAGTAAAAGCAGGATTCAGAGACAGCTGGAAATCACTGGAAAAATCACAACAAATGAGGAACTGGAGGAGATGCTGGAGACTGGAAACCCTTCCATTTTCACTTCTGATATCATCTCTGACTCTCAGATAACTCGTCAGGCCCTTAATGAAATCGAATCTAGACATCAGGATATCCTGCGTCTGGAATCCAGCATCAAAGAGCTTCATGACATGTTTGTGGACATGGCCATGCTTGTTGAAACCCAGGGTGAGATGATTGACAACATTGAAAAGAACGTCCACAATGCTGTCGAATACGTCGGCCAGGCTAAAGTGGAGACAAAGAAAGCTGTGAGGTACCAGACAAGAGCCCGCAGGAAACACATCATTCTTGCTCTTATTGTTCTGGTCGTGGTTGCTGTGGTCGCACTAATCATTGGTTTATCTGTTGGCCTGTCTGGTAAAACCAGTACTAACACCGCCGCCGCCAGTTCTAATGCAGCCAATCCTGTTTAAGCATGCTTTCTGAGAAATGGGTCTATGGTGCCATTTGTGGAGCCGTGTGTATCATCATTCTTCTCCTAATCATCATCACTGCAGTTTATGTTGATTAGTCACCTACAATGAAACCATCTTCCTTTTGACCTTA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006887 exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:0030154 cell differentiation biological_process
GO:0048278 vesicle docking biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0007340 acrosome reaction biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0048787 presynaptic active zone membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0012505 endomembrane system cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-424 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; synaptic vesicle fusion to presynaptic active zone membrane; and vesicle docking. Predicted to act upstream of or within acrosome reaction; cell differentiation; and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in presynaptic active zone membrane and synaptic vesicle. Predicted to be integral component of membrane. Orthologous to human STX2 (syntaxin 2).

Ensembl:

ensembl_id ENSDART00000132015

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071620 lncRNA downstream 271197 43934595 ~ 43940177 (-) True XLOC_036676
TCONS_00071614 lncRNA downstream 465010 43745772 ~ 43746364 (-) False XLOC_036673
TCONS_00071610 lncRNA downstream 515661 43695310 ~ 43695713 (-) False XLOC_036672
TCONS_00071605 lncRNA downstream 824532 43385738 ~ 43386842 (-) True XLOC_036671
TCONS_00072081 lncRNA downstream 1138965 43059762 ~ 43072409 (-) True XLOC_036669
TCONS_00071636 lncRNA upstream 8641 44232839 ~ 44234512 (-) False XLOC_036680
TCONS_00072509 lncRNA upstream 8641 44232839 ~ 44238627 (-) False XLOC_036680
TCONS_00072510 lncRNA upstream 8641 44232839 ~ 44299247 (-) False XLOC_036680
TCONS_00072511 lncRNA upstream 56374 44280572 ~ 44299284 (-) True XLOC_036680
TCONS_00071641 lncRNA upstream 116306 44340504 ~ 44344716 (-) False XLOC_036682
TCONS_00071623 mRNA downstream 196164 43941313 ~ 44015210 (-) False XLOC_036677
TCONS_00071624 mRNA downstream 196164 43941313 ~ 44015210 (-) False XLOC_036677
TCONS_00071622 mRNA downstream 196164 43941313 ~ 44015210 (-) False XLOC_036677
TCONS_00071621 mRNA downstream 196164 43941313 ~ 44015210 (-) False XLOC_036677
TCONS_00071626 mRNA downstream 196164 43941733 ~ 44015210 (-) False XLOC_036677
TCONS_00071633 mRNA upstream 495 44224693 ~ 44238633 (-) False XLOC_036680
TCONS_00071634 mRNA upstream 511 44224709 ~ 44238526 (-) False XLOC_036680
TCONS_00071635 mRNA upstream 5970 44230168 ~ 44238633 (-) False XLOC_036680
TCONS_00071637 mRNA upstream 9572 44233770 ~ 44238627 (-) False XLOC_036680
TCONS_00071638 mRNA upstream 10279 44234477 ~ 44299247 (-) False XLOC_036680
TCONS_00071629 other downstream 170461 44040796 ~ 44040913 (-) True XLOC_036678
TCONS_00071599 other downstream 1306732 42860031 ~ 42904642 (-) True XLOC_036668
TCONS_00071593 other downstream 1642148 42549138 ~ 42569226 (-) False XLOC_036665
TCONS_00071589 other downstream 1702868 42508390 ~ 42508506 (-) True XLOC_036664
TCONS_00071588 other downstream 1859057 42352201 ~ 42352317 (-) True XLOC_036663
TCONS_00071640 other upstream 116306 44340504 ~ 44341615 (-) False XLOC_036682
TCONS_00071642 other upstream 117343 44341541 ~ 44344742 (-) True XLOC_036682
TCONS_00071656 other upstream 976662 45200860 ~ 45202077 (-) True XLOC_036696
TCONS_00071662 other upstream 1187383 45411581 ~ 45411745 (-) True XLOC_036699
TCONS_00071682 other upstream 1659567 45883765 ~ 45896826 (-) True XLOC_036705

Expression Profile

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