RNA id: TU311226


Basic Information

Item Value
RNA id TU311226
length 4487
RNA type TUCP
GC content 0.41
exon number 3
gene id G229423
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21837922 ~ 21847020 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tATTTGTGAACtaatttataattttgttgtgcttttcttttgataTGTCTAAAATGCATTTCTTCATTCATTAGTAATTTTAGTAGTAGTGTATATTGCACCAATTGGCCACCATGTTTATGTTTGCATCATAGTCTGGCTGATCAGCAGGCCTAGTTGTGGAAGTCCAGAAAATAGGCTGGCAAGCAGGGCTGCAAGACATGAGGGAAATATCTAattgattatagtgtgattttggcGAGGATCTGTTCCAAACaatctgtaggataggatttgtaggattgtgacgtctctgcagcacccagaggtgggtagagtagccaaaaattgtactactaaaaagtagtcatccaaataattacttgagtaagtgcttggtgaaaaaaactactcaagtactgagtaactgttaaGTGTAGTGTctgattattttttaacacaagcattcaatcagacagacaaaaatacaaaataatcatctttaagcaaattatagttcatccaatcaattaaataaattaaaataaattaattacaaaatagcttaaattaaaataatccaggtaaattaaagtacttaaaaaataaaatcaataataaataataaataaaaaagaaataagcacaagtaacacaaatttaacaggctctgcaggcagaactagaacaaggtaatgtagctgctgtttcacacttttactatatatatatatatatatatataaggtaaacatgctttcaatatGAGGCCAGGGGTGTACCTCCTCGTCTATGTCTGCATTGCCGacggttgattctgacatttttgttttgctacgACTGTAAAGCTAATCCGTCCGAACCCGTCCCGccagcgatattacgaatcccactatggccacgccaagacccgcccttcaatagcatttattggccaggcgtccataagaacgcaaggtaacgtaaccccattttttcatgtcctatcccctgaccaaccGGCTATcctaaccaagggggtaagcttcgcttcagaactcgagccatcatggcgccattttgttgctaactggccatcacctcctgttagcattccgctgaccgccatttttttttacgtcacttgactgagaataactttacatctgaagtgtttaaagactcgatttgtccattgtttagttctaaagaaacacaacaatgtataaaaggctcaattaccttgtatctcacgttatggctccgtagcagacgtttttgtaaaaataggctaacgattgtgtcataaccaagtgacttactgtcgcacagtagaggaattaccgtatagtacaggagaagctcgcaggcagtttggacttacattagctgtttaggtttaattacgaatgttaactagcatgttagttagcaataattagcctgtgcttatgttatctccttacatatacctacactctccgtctctgtaagattgggaatgattgagatttctcttggcacagctaccagaacacttacaactttcagacacgttgctcacgtcacatttacgcggTCTCtttcagttggaggctgcgcagtaaagctggccatcaccggaaaagtgcttctaatagccttcactggtctccgtccagagcaacgggctctgttggtccattatatatatgtcaatgatcctaaccctaaccactcgaggtgaaatgcctaaccccaaccaatcaagctgcttcgtagggcgggtcttggcgtggccatagtgggattcgtaactTTGCGTCCCGCCGCCGAGATTGAGTATGGTCaagtgacgagactgcacaactgcgtttgattggtgaaacacagtcacgtggtagagcctttagcggaagtctctctctctgtcaaaataaaacattcaaatgaGGCGGACGcgggggggataaaaacaatgatgcgtagaataccaaacaggtaaaaagaaaagtaacaagctcattgtagcctaatgtagcgtaagtagagtaagagtacagtttcttcttcacaaatctactcaagtaaaagtaataagtatagtgatttaaaactactcctagaagtataattttttcaaaaacttactcaagtaaatgtaactcgctactacccacctctggcagcaccacaatacttcattcagaatggttcgACAcatatattttgcctttaacaaatattgcgccagggggacaagggaaaataaaatagtaggccaacacaaacacggactgaaAGGAATAAAACGTCCGCACTTAATGGAATGGAAGGGGGATGTAATTTAATGTCGGCTACTGTCTACAACCACATCGCGCAATCTAAAGTTATTTtgtgaatgaaatagacatattacatacctgagggccattTTGGGGTGTggtttgaatcatttacaatccagtaattgtctccatctgttgaaagcccgacccAGTGTGACTCGGATTTCGCCTGTCGTCTGtccctttcccttttagcttttagttgttctttgtttaatttccttcttccTGTGATGGCCTTGCCCCaatatcagccataactacagcagataacttctaaaataaaataaaaatacaattaggcctacataaagaaatctcctgcttccttttaccTGGCCGGATACTTAAACACAGGCTTTTCCAGTGTTAtgccgaaatctgtgacccgtcagattGTTACTGTATCACGTCTACCTAATACATCAGTTATCATCTTTTTTGTCATGATTGtattagagaaaagaaaaaaatcacttaatcCGATGATTAAAGTAAACAAAATAGCCTTGCCAGGCTACTTACTGGAGTTCCACAACTACACTACACAAGTAGCCTGACGTTGTCACACTCAGATTTTATTCAGACTATGAGTCTGATtgtaacaggaaaaaaaaaatgcctctgcactcaattggatagacctacaaccaatcagaacaacGGAGTATGTGACGAAGGATGGCAAAAACATATTTCCGATCGACAAATGCCTTGAttgcggttctctgttcctcttttaaaatgaatgcgctctcgatatcttctataacagattCTATaatctccagcggcagccatctttgttgtaaacaaattcatggtgacgtggttgatcaCGTTACtcttgatcatctgtccatcatcgtataaagcccgtcctgacaatttgattgctccaaacagctctggttcgagcatcgttgctccacaacggatcaagtccagaccgaacttcccgacctcaaatgttgtgggcggagctaagttcggctggcatccaggctactaCACAAGTACAAATTCAGCTATATTATTTGTGTCTCCTTTAATAAAAGTAAGGGCTATCCCAATTCTCGTTTTCATCGAGAGTAGGGCTAAGGGGAAGGGCTAGATACCCCTTAAAACCAAGCAAAGACGCAAGCTTACTTGAAAGCAAGGGGTATCCAGAATACATTGCGCAACCTGCAACAATGGCTGCCAGATCGACCACAGAGAGccataaatgtaagtattttcggcttcaagaattgatttaaaaattacgactgtcttgttttgtgctctacacagtcctgtacatatatatattgcgACCATGTTCTTAattgaaacgtttttaaaaatcgcTAGTTTGCTATGCTAACGCTAACATTACATTGCAGTCCTGTATTTCTCTGCCTTGAATGGACTCCATGCATGTCTACAGTTTTAACTAAACTCTATTAGCAGCGAATTTAGTTTGATATCAGTGCATAACACTACTTGCTTTGGAGACATTGATACGTGCTTAACATATACCGTCCCGTATCACACAGGGACCCCGGAGGAACATATACCatcctgtatcacacagggacgcCTGAGGAAACCCAGCAGCTGATCCACTTTCGGGCCGAAAATGAGCAGAAGTTTCTTAAATCAAAATATGCTGCAAAGCAACTATGGGATACCAGAGGAAGCGGTCATAGTGCTATGCTGCAGCCATAGATGAAGACCACCATGGATACCAGAGCTTGTATCAGAAGGGAGTACATTGCCATCTTCTTCTTTCTGGCTGCGGCTGTCTCCATCATTGTGTTACATAACATGGAAGTTCTGGAGACCACCTTCCAGATTCAGCATAAAGTGAACTCCACCACCATCATTGTCCCGAGAGTTTCCACTGTGCCTGACGTGGATCGCGGCTTCTGCACCTTCCAGCCACTGTCTCCTAAGGACGCTCTGGAGGAACGCTTCCTACTGGACTCCATTGCTTGGCCTGAAACTTCACTATTGCCAGCTCCTCTTTCCCTGGAGAAGACCAGTGATCCAGCTCACAGCTCTTTCACCATTCTCccaaggaggggaggaggacagTGGCACGTAGGGGATCAGCTGGAGGTTAAGATCAATATGTCTGATTTCCAGGGCCGTCCCAAGAAGTCTGGAGGGGACTTCTTACTCGCCCGACTGCACAACCAGAAGCTTGGTGCAGGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311254 lncRNA upstream 4125 21829015 ~ 21833797 (+) True G229450
TU311253 lncRNA upstream 4125 21831602 ~ 21833797 (+) False G229450
TU311235 lncRNA upstream 69893 21767353 ~ 21768029 (+) True G229432
TU311194 lncRNA upstream 154438 21682619 ~ 21683484 (+) True G229399
TU311191 lncRNA upstream 169934 21667713 ~ 21667988 (+) True G229396
TU311234 lncRNA downstream 6176 21853196 ~ 21866320 (+) True G229431
TU311290 lncRNA downstream 204988 22052008 ~ 22098446 (+) True G229481
TU311294 lncRNA downstream 282006 22129026 ~ 22131396 (+) True G229485
TU311300 lncRNA downstream 446477 22293497 ~ 22293760 (+) True G229491
TU311302 lncRNA downstream 473246 22320266 ~ 22320528 (+) True G229493
XM_039791169.1 mRNA upstream 36250 21787567 ~ 21801672 (+) False LOC120553088
XM_039791166.1 mRNA upstream 36251 21766907 ~ 21801671 (+) False LOC120553088
XM_039791167.1 mRNA upstream 36251 21787216 ~ 21801671 (+) True LOC120553088
XM_039791168.1 mRNA upstream 36251 21789043 ~ 21801671 (+) False LOC120553088
XM_039791170.1 mRNA upstream 71405 21757653 ~ 21766517 (+) True LOC120553089
XM_039791174.1 mRNA downstream 23563 21870583 ~ 21877270 (+) True LOC120553094
XM_039791175.1 mRNA downstream 23563 21870583 ~ 21877270 (+) False LOC120553094
XM_039791176.1 mRNA downstream 23682 21870702 ~ 21877270 (+) False LOC120553094
XM_039792517.1 mRNA downstream 31258 21878278 ~ 21890573 (+) True LOC120553802
XM_039792519.1 mRNA downstream 47920 21894940 ~ 21928410 (+) True LOC120553804
unassigned_transcript_1526 other upstream 241044 21596768 ~ 21596878 (+) True trnal-caa_47
unassigned_transcript_1525 other upstream 241786 21596026 ~ 21596136 (+) True trnal-caa_46
unassigned_transcript_1524 other upstream 243498 21594314 ~ 21594424 (+) True trnal-caa_45
unassigned_transcript_1523 other upstream 244038 21593774 ~ 21593884 (+) True trnal-caa_44
unassigned_transcript_1522 other upstream 244384 21593428 ~ 21593538 (+) True trnal-caa_43
TU311228 other downstream 2191 21849211 ~ 21850601 (+) True G229425
TU311225 other downstream 10963 21857983 ~ 21859209 (+) True G229422
TU311231 other downstream 20181 21867201 ~ 21868297 (+) True G229428
XR_005638197.1 other downstream 892697 22739717 ~ 22743179 (+) True phlda1
XR_005638156.1 other downstream 1468403 23315423 ~ 23440663 (+) False kcnc2

Expression Profile