RNA id: XM_039791992.1


Basic Information

Item Value
RNA id XM_039791992.1
length 2402
RNA type mRNA
GC content 0.45
exon number 10
gene id krr1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23192726 ~ 23206478 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCAAGCTGCCCGTAAACTccaaacaagaagaagaagccgGTTTCCTCCAACAACAATGGCGTCCTCCACGACGGGAGACGGCGTGAGTGAAGCACAAACAGGGAAAAAATCCAAAAAGACTAAAAGCCAAGtggatgaatctgaactACTGGCTGTTCCTGATGGATGGAAAGAGCCATCTTTCACCAAAGATGACAACCCCCGTGGTCTTCTGGAGGAGAGCAGCTTTGCCACCCTCTTCCCCAAATACAGAGAAGCCTACCTGAAGGAGTGCTGGCCGCTTGTGGAGAAGGCTTTAGGAGAGTCAAACATCAAAGCCACTCTGGACCTGATAGAGGGAAGCATCACAGTTTGCACCACTAAGAAAACATATGACCCTTACGCCATCGTGAGGGCCAGAGATCTCATTAAGCTGCTGGCCAGGAGTGTCCCATTCGAGCAGGCGGTGCGGATATTACAGGATGACATGGCGTGTGACATCATCAAAATCGGGACCATGGTGAGGAACAGGGAGCGGTTTGTGAAGCGACGACAGCGGCTGATTGGCCCCAAGGGCTCCACTCTAAAAGCATTGGAGTTGTTGACCAACTGCTACGTGATGGTGCAGGGCAACACGGTGTCGGCCCTGGGGCCCTTCAACGGTCTGAAGGAGGTACGCAAAGTGGTGATGGACACAATGAAGAACATTCATCCCATCTACAACATCAAGACACTGATGATCAAACGTGAGCTGTCCAAAGACCCCGACCTGAGGATGCAGAGCTGGGAACGCTTCCTGCCCAAGTTCCGCCACAAGAACCTGGCCAAGCGCAGGGAGCCCAAGAAGAAGAGTGTGAAGAAGGAGTACACGCCGTTCCCTCCAGCACAGCCAGAGAGCACGGTTGACAAGGAGCTGGCCACAGGAGCATTCTTCCTGCGTGAAAGtgttaaaaagagaaagaagatggAAGAGATCAAAGTGAAACAAGCGGAGGCACTGACCAAGAAGCAGGAAGAGCGGAACAAAGCTTTCATTCCTCCTAAAGAAAAGCCTTTAATGAAGAAAACCCCAAAAGCTCCTACAGAAGGCAAGCTGGACATCGAAGCCATCAAGGAGAAAGTGAAAAAAGCCAAAACCAAGAAACTGGGGGCTCCACCAGTGAACCCATGTCCCCCCACCAGCAGCACCActggcaaaaagaaaaagagcaaaacaaaaaacaaaggctAACCACAGACTTAGACTGTCATAGTTGTAATGTGTACTCCATGATATGGTATTTGTTGGACAGTCCTATTGGACAGATTAAGGACTCTGTCAGGAAGATGGGACGCCAGACATACAGTGTGTGCTTGGATCAAAAATGAATTCCATCACAAACTCATGTTtttattgaactttttttttgtggagatTTCCTGTTCATAATACCTAGTTTAATCTTCTTTCTGGAGACCAATTCTCAGTCGGTATGCTCAGTATTTATACATTTCAAAAGATATTGTTCTGTCCTTAAGGCTAATGCGTGTCCAGGAGGAGGCCGACCCACTCTGATGGAAATGTCAAATTAAAGGAAGATTTTTACAACCTGGATCTTACATCTGTAGGTTTGCCTTAATTCTTTTTGATCATGAAAACAAACTTAATATAGAGGTGAAGTATGGGTGGCTTGACTTAACAATATCTCTAGATACAGGTTTATAGCAAAGTCCACATTTCTTGGTGGTGAGATTTAAAGTCCAATTTATCTAAAGCACTTATTTGGAAGTAAAAATAAAGGTCAGTGTTGGATATCATTCTATTTTTTTACCTCCAAAgaggttatgttttcggttGGGTATGTCAGTTTGTCTGTCAACACGATTGTGAAAGCACTACTGACCCGATTTTCACCAAACTCAGTGGAAGGGTGTATTATGGGCAAGTAAGACCCATTATATTTTGGAGTGGATACAAATCACGGAGTGGGAACACAAAATATGTTTCACTTTAATTAACCTCACGAAATaggtgctgcattcatgtggtgtcggcATAATGAGTTCCCGACTGGAGAAATTCACAATGCATTGTGAGGTGGGGcatgccttggcggaggtctgcgctctGAGTGCCATTCTCGGAGAATcaattggtttatttttttaacttcttgCAGTTTATCAAGGACATGTTATTGCCTCATAAAGTTGATATGGTGAACATGTTAGCGAACAGCTGTCTATTTACTTGTCTAGTTTGTATACACagagtccaatattcactcttctGTTGGCTGGAAATATCTCTCTTTTTGCTCACCTAGTTGCTAACTCGATTAGACCTCTGACCTTTATGTGCAGATCTTCCAGTAAGTGACAAGAGAAAAGCTGCCTATTGACaaaaattaaatgttaaataaaaccTGCATCTTCATCGTA

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K06961 KRR1; ribosomal RNA assembly protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311565 lncRNA upstream 4954 23149910 ~ 23187772 (+) True G229668
TU311555 lncRNA upstream 6171 23104180 ~ 23186555 (+) True G229659
TU311576 lncRNA upstream 13774 23177956 ~ 23178952 (+) True G229672
TU311564 lncRNA upstream 43312 23148906 ~ 23149414 (+) True G229667
TU311539 lncRNA upstream 155399 23028839 ~ 23037327 (+) True G229645
TU311580 lncRNA downstream 598 23207076 ~ 23208200 (+) True G229676
XR_005638073.1 lncRNA downstream 26020 23232498 ~ 23257861 (+) True LOC120552982
TU311602 lncRNA downstream 230087 23436565 ~ 23440540 (+) False kcnc2
TU311754 lncRNA downstream 373243 23579721 ~ 23585499 (+) False G229821
TU311755 lncRNA downstream 373243 23579721 ~ 23585499 (+) True G229821
XM_039792453.1 mRNA upstream 144132 23021415 ~ 23048594 (+) True LOC120553757
XM_039791092.1 mRNA upstream 225761 22956704 ~ 22966965 (+) True LOC120553035
XM_039791089.1 mRNA upstream 275149 22892813 ~ 22917577 (+) False LOC120553032
XM_039791088.1 mRNA upstream 275149 22896015 ~ 22917577 (+) True LOC120553032
XM_039792335.1 mRNA upstream 449547 22739717 ~ 22743179 (+) False phlda1
XM_039791645.1 mRNA downstream 83100 23289578 ~ 23299318 (+) False ccdc107
XM_039791644.1 mRNA downstream 83101 23289579 ~ 23299317 (+) True ccdc107
XM_039791648.1 mRNA downstream 108943 23315421 ~ 23440663 (+) False kcnc2
XM_039791649.1 mRNA downstream 108944 23315422 ~ 23440663 (+) False kcnc2
XM_039791650.1 mRNA downstream 108944 23315422 ~ 23440663 (+) False kcnc2
XR_005638197.1 other upstream 449547 22739717 ~ 22743179 (+) True phlda1
TU311231 other upstream 1324429 21867201 ~ 21868297 (+) True G229428
TU311225 other upstream 1333517 21857983 ~ 21859209 (+) True G229422
TU311228 other upstream 1342125 21849211 ~ 21850601 (+) True G229425
TU311226 other upstream 1345706 21837922 ~ 21847020 (+) True G229423
XR_005638156.1 other downstream 108945 23315423 ~ 23440663 (+) False kcnc2
XR_005638155.1 other downstream 108945 23315423 ~ 23438926 (+) False kcnc2
XR_005638157.1 other downstream 108945 23315423 ~ 23438184 (+) False kcnc2
TU311873 other downstream 626553 23833031 ~ 23848624 (+) True adm2a
TU311874 other downstream 626553 23833031 ~ 23848624 (+) False adm2a

Expression Profile