RNA id: TCONS_00073316


Basic Information

Item Value
RNA id TCONS_00073316
length 3376
RNA type mRNA
GC content 0.54
exon number 8
gene id XLOC_037253
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32358514 ~ 32457334 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCTAACCAACTGATCCTGAAGATGTCGGAGTCTTACGAGGACGGGGTGTGCGGGGATGGAGCTCCGGACTTCATCCCACCGAGAGCGCTTCGATCAGGCCGGCGGAGTGGAGTCGCCGTGCCGCTGGTGGAGCGCGACGAGGCGGCGCTTCTGGAGTCGGTGAAAGCGGCACCGAGGAGGAGCAGCATCATTAAGGACCCTTCAGTGGCCAAGGTCAGTGGAGGGAGGAAGAAAACTGTCTCCTTCAGCAGTATGCCATCAGAAAAGAAGGTTAGCAGTGCTGCAGATTGCCTGGCCTTCATGCAAGGTGGCTGCGAGCTAAAGAAGGTGCGACCCAACTCGCGCATCTACTCGCGATTCTACACTCTGGACACAGAACTGGGCTGCCTACGTTGGGAACCCTCCAAGAAAGATGGAGACCGAGCCCGACTTGATATATCTGCCATTCGTGAGGTCCGCACTGGGAAAAGCACAGAGACCTTCATCCATAATGGCCCATTAGATAACCTGGCTGAAGAAGCAGCCTTCTCTATCATTCATGGGGATGATTATCAGTCCCTTGACCTTGTTGCTCTTTCTGCCGATGTGGCCAACATCTGGGTGACAGGGATGCGGTACCTGTTGTCTCACCCTGGTGCCATTGGTGGAGGTATTGGAGGGGATGGGGGTGTGGGAGAAGGCAGCATTGGAAGCAAGATGAGGAGGAACTGGTTGGTGGCTGAGTTTGCTCTGGTTGATGAGGATGGACACGGAATTGTGTCTGAAGATACAGCAGTGGCCACCATCTGTAAACTCTGCCCTGGCATTAAAGAAGCAAAGGTGCGTTTGCGCTTCAAGGAAATTCAGAGGAGCAAAGAGAAGCTTACTTCCCATGTTACGCTGGAAGAGTTCCAGGAGGCCTACTGTGAGCTGTGTACACGACCTGATGTCTATTTTTTGCTAGTGCAACTCTCTAAAGACCGAGAGTGCCTTGACGCCCAGGACCTGCGCCTTTTCCTGGAGTCAGAACAAGGTCTGTCAATGGCCACCACTGAAGGCTGCTTGGAGCTTCTTCGCCTCTTTGAGCCCTCTGCAGCTGGACGTGAGCGAGGTCTTTTGGGCTTGGATGGCTTTGCTCGCTACCTACAGTCAGCTGAGTGCCAGTTATTAGACCCGGAGCACCAGAATGTGTGCCAGGACATGAAGATGCCCCTGTCTCATTATTTTATCAGTGCCTCCTACCGCTCCTACCTGCTGGATGACCAAGTGCATGGCCGGGCTGATCTTGGGGGTCTCACTCGAGCCCTGCAGGCTGGCTGTCGTTGTCTAGAATTGGGGGTTACGGATGGGCCAGAAGGAGAGCCACTGTTGGGTGTAGACCATGGTGCAGAAGTAAAgcatcatcaccaccaccaccatcaccaccaccaccatcatgGTTCTGTTACTCTGCGCAGTGCCCTGGAAGTAGTCAATAAGTATGCTTTTCTCACCTCACAGTATCCTTTGTTGCTGTATCTGTGTCAGCGTTGTTCACCTTCCCAGCAACGTACTCTTGcacaacacttaaaaaaagtttttggacCCAAGCTCTATACCCCTGAGTCTCTGCCTGTTAGTTTGGGAGGTCGTGCGACTACCTTGCCATCTCCAGAACAACTGAAGGGCAAGGTGCTTCTTGTTGGAAAGAAGCTTCCCCCAGAGGAGGAAGGTTCGGAAGGAGAGGTTTCCGAGGAGGATGAGGAAATTGGCGGTGGTGGTCCTTTAGCTGGCCGAAGGATGACTATACCTGGGGAAGAGGAATTGGGGGTGGTCCTTGTTGTCCCACCACCCCCACAGCCAAGGCGCCTCCGCTTGCGTCATGAATTGTCTGATCTTGTTGCAGTTGCTCGTACTGGAAGTCGAAACTTTTATGCTCATCGGGCAAGTATTCTGCCATCCCAACAACATTCACCCCCATCAACTCCTTCTACGCCAGGTACACCTTTGAACATTGATCCCTCCTACTGGACCCTATGCTCTCTTGGGGAAGGGGAGGCAGGAAGGCTGGCTAGTGAGAGTCCAGAGGAGCTGGTAAGCTTTACCAAACGCAATCTAACCCGTGTGAGGCCCAGCTCAGTCAGACTTGACTCTAGCAACCCAAACCCACAAGGCTACTGGAAGGGAGGCGTGCAACTGGTGGCGCTCAACCAGCAGACGCCAGGTGCCATGCTAGACCTGAACCGTGGCCGTTTCATGCAGAATGGTGGGTGTGGGTATGTTCTTCGTCCAGCAGTCATGCGAGAGGAGGTTTCTTACTTCAGTGCTCAGTCACAGGGCTGCGTGCCTGGAGTACCACCACAAACACTCAGGGTGAAGGTCATTAGTGCCCATAGTCTACCCAAGCCACAAGGCTCTGGTGCCAAAGGTGAGGTCATTGACCCATATGTGGTGCTGGAACTGCATGGTGTGCCTGCAGACTGCACAGAGCAGAGAACTCGCACTGCTGCCCAAAATCAGGATGATCCACTGTTTGACGAGACTTTTGAGTTCCAGGTGAACATGCCTGAACTAGCCCTGCTGCGTTTCGTTGTTCTGGATGATGATTATATAGGCGATGACTTCATTGGCCAGTACACCATCGCGTTTGAGTGTCTACAGCCCGGTTACAGAAATGTGCCCTTGCTGGGCCTCGCTGGAGACCCTTTGCCCCATGCCAGCCTGTTCATACACATCGCCATCACCAACCGCAGAGGTGGAGGAAAGGCTCAGAGACGGGGTCTGTCCGTCCGCAGAGGTGTGCGGCGGGGACGAGAGTATGTCACCCTGCGTAACACAGGCATCAAAGTGCTGGATGACACTTTCCGGCCTGCCAGTGGGCCTCTGCGAGAGGCTACAGACCTGCGGGAGGATGCAATGTGCGCTACAGTGGCTTTTAAAGAGCTGTGTGGGCTCCCCCCAATGGCCACACTAAAGCAGTGCATCCAGAGCTTGGCCACAAGATTGCAGAGTCCAGACGGGCCCCCAGGGGCCACACTCACTCTGAAGGACGGCTACCCATTCCTGGAACCTGCGGCCAACTTGACCGATGCCACTCGTAAGCTGCTAAATGGTTATGACACGATGATCTCCGCTAACAAACAGCTGATTGAAAATGCAGATGGAGTGCAGGAGAAAATCGCTCAAGTGCAAAAAGAAGGAATGGTGTTTCATGAAGATCTGCCCAGGTTAGGAGAAAAGGAGAATCTGAAGGGTCGCAAACAGAGTAAAGCTGTGGAAAGTTTTGCCTGGAACATCACGGTGCTGAAGggTCAGTGTGATCTCCTGCGTAGTGCTAAAATAGATGCTTTGGATACGTTAAGGCAACTTGCATTGGCCTGTGAAGCGTCCGGCCTGATTGTGACCTCTGACGGTCA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0032228 regulation of synaptic transmission, GABAergic biological_process
GO:0007165 signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0070679 inositol 1,4,5 trisphosphate binding molecular_function
GO:0050811 GABA receptor binding molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
ko04727 GABAergic synapse
ko01009 Protein phosphatases and associated proteins
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-090313-194 Predicted to enable GABA receptor binding activity; inositol 1,4,5 trisphosphate binding activity; and phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within intracellular signal transduction; lipid catabolic process; and regulation of GABAergic synaptic transmission. Is expressed in hindbrain; lateral line nerve; and spinal cord. Orthologous to human PLCL1 (phospholipase C like 1 (inactive)).

Ensembl:

ensembl_id ENSDART00000144608

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075155 lncRNA upstream 9489 32344883 ~ 32349025 (+) True XLOC_037252
TCONS_00074917 lncRNA upstream 120405 32223695 ~ 32238109 (+) True XLOC_037249
TCONS_00073308 lncRNA upstream 165995 32189139 ~ 32192519 (+) True XLOC_037248
TCONS_00073295 lncRNA upstream 287381 32069957 ~ 32071133 (+) False XLOC_037245
TCONS_00075154 lncRNA upstream 444052 31913496 ~ 31914462 (+) True XLOC_037243
TCONS_00074918 lncRNA downstream 79603 32536746 ~ 32537384 (+) True XLOC_037254
TCONS_00073321 lncRNA downstream 191933 32649076 ~ 32651437 (+) False XLOC_037255
TCONS_00073325 lncRNA downstream 192364 32649507 ~ 32650104 (+) True XLOC_037255
TCONS_00075156 lncRNA downstream 434754 32891897 ~ 32895100 (+) True XLOC_037257
TCONS_00073335 lncRNA downstream 688442 33145585 ~ 33147007 (+) False XLOC_037262
TCONS_00073315 mRNA upstream 45652 32306862 ~ 32312862 (+) True XLOC_037251
TCONS_00073311 mRNA upstream 53507 32301125 ~ 32305007 (+) False XLOC_037250
TCONS_00073310 mRNA upstream 53509 32301125 ~ 32305005 (+) False XLOC_037250
TCONS_00073312 mRNA upstream 53509 32301456 ~ 32305005 (+) False XLOC_037250
TCONS_00073309 mRNA upstream 53938 32301017 ~ 32304576 (+) False XLOC_037250
TCONS_00073320 mRNA downstream 178403 32635546 ~ 32670526 (+) False XLOC_037255
TCONS_00073323 mRNA downstream 191945 32649088 ~ 32652419 (+) False XLOC_037255
TCONS_00073324 mRNA downstream 191975 32649118 ~ 32652416 (+) False XLOC_037255
TCONS_00073326 mRNA downstream 402824 32859967 ~ 32874304 (+) False XLOC_037256
TCONS_00073327 mRNA downstream 403202 32860345 ~ 32875568 (+) False XLOC_037256
TCONS_00073307 other upstream 171262 32184055 ~ 32187252 (+) True XLOC_037247
TCONS_00073304 other upstream 254707 32100203 ~ 32103807 (+) True XLOC_037246
TCONS_00073294 other upstream 365081 31993311 ~ 31993433 (+) True XLOC_037244
TCONS_00073291 other upstream 785835 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073288 other upstream 862749 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073322 other downstream 191933 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073333 other downstream 617537 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073341 other downstream 723539 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073351 other downstream 787055 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073362 other downstream 1353303 33810446 ~ 33836470 (+) True XLOC_037278

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_02028234_02100154.mRNA True 3330 mRNA 0.55 9 CI01000009 2028234 ~ 2100154 (+)