RNA id: TCONS_00075166


Basic Information

Item Value
RNA id TCONS_00075166
length 597
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id XLOC_037297
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34970843 ~ 34973324 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCTCTTGAGGGATCTCTTCCAGCAAAGTGacgttaaaaacatttttgaagttTTCAATGAAACGCAAGTCAGAAGGGAATCGTACCTGTTTGGAAAGACACAACAAACCAATCAAGATTTTAAACTTCCCACTATGGACACCAGTCCTGTTCCTGCTCCAAGTTCCAGTACTGCTTTATCCAGAAGTTCAACCTGATCTCGTTGTTTCTCCAAATACCGACAGAGAGCCACAGCCTGTGTAGAATTATACATGCAGTCTGTGCAAACACCAAGATGACGGCACCAAAAGAGTCCAGGGATTCCCGGATGCTGACCTCCTGCCCAGTAAAGAAAAAGGTCTCATTGCCTAGGGAATAGAAGACACTGGGCTCCCAGGCATTACGTCTGTTCAGTGCCTCCTTCTGCATGTCTTTAGCCTCCTGATCTTCTGAAAAAGAGCATGGGTAAAAAAATATCATTGTAAACACTGTTTGCTGAACAATATGCACCTGCACACAatacaattcaaataaaataatgcagGTTTGTTGAAAATATAACACAAAAAATGAACGCTAACACTTTAGTTTGTGCTATTtgtcactattaactagtgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073393 lncRNA upstream 11069 34950942 ~ 34959774 (+) False XLOC_037295
TCONS_00073391 lncRNA upstream 142745 34822849 ~ 34828098 (+) False XLOC_037294
TCONS_00073392 lncRNA upstream 142745 34826665 ~ 34828098 (+) True XLOC_037294
TCONS_00073382 lncRNA upstream 551290 34416401 ~ 34419553 (+) False XLOC_037290
TCONS_00075165 lncRNA upstream 579690 34390451 ~ 34391153 (+) True XLOC_037289
TCONS_00073399 lncRNA downstream 32767 35006091 ~ 35010396 (+) True XLOC_037298
TCONS_00073406 lncRNA downstream 52980 35026304 ~ 35030107 (+) True XLOC_037299
TCONS_00075167 lncRNA downstream 104226 35077550 ~ 35081996 (+) False XLOC_037300
TCONS_00073408 lncRNA downstream 106246 35079570 ~ 35081230 (+) True XLOC_037300
TCONS_00075168 lncRNA downstream 187320 35160644 ~ 35163664 (+) False XLOC_037301
TCONS_00073394 mRNA upstream 2414 34950942 ~ 34968429 (+) False XLOC_037295
TCONS_00073396 mRNA upstream 7874 34952269 ~ 34962969 (+) True XLOC_037295
TCONS_00073395 mRNA upstream 8118 34952203 ~ 34962725 (+) False XLOC_037295
TCONS_00073389 mRNA upstream 323148 34641237 ~ 34647695 (+) True XLOC_037292
TCONS_00073387 mRNA upstream 488145 34433053 ~ 34482698 (+) False XLOC_037291
TCONS_00073398 mRNA downstream 22921 34996245 ~ 35009747 (+) False XLOC_037298
TCONS_00073400 mRNA downstream 41189 35014513 ~ 35025517 (+) False XLOC_037299
TCONS_00073401 mRNA downstream 41404 35014728 ~ 35025517 (+) False XLOC_037299
TCONS_00073402 mRNA downstream 42423 35015747 ~ 35018193 (+) False XLOC_037299
TCONS_00073403 mRNA downstream 42877 35016201 ~ 35025117 (+) False XLOC_037299
TCONS_00073397 other upstream 1276 34969450 ~ 34969567 (+) True XLOC_037296
TCONS_00073390 other upstream 179956 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073386 other upstream 541623 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073385 other upstream 541723 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073383 other upstream 541731 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073405 other downstream 44523 35017847 ~ 35022314 (+) False XLOC_037299
TCONS_00073409 other downstream 455878 35429202 ~ 35429316 (+) True XLOC_037302
TCONS_00073415 other downstream 888760 35862084 ~ 35863842 (+) True XLOC_037304
TCONS_00073420 other downstream 1821060 36794384 ~ 36795322 (+) False XLOC_037311
TCONS_00073421 other downstream 1821395 36794719 ~ 36797775 (+) False XLOC_037311