RNA id: TCONS_00073401


Basic Information

Item Value
RNA id TCONS_00073401
length 1914
RNA type mRNA
GC content 0.52
exon number 10
gene id XLOC_037299
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 35014513 ~ 35030107 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAGCGTGTCAGTTTTCCCGCTTTCTGCGCGAGCTAGCTGTTAGCATCCTGAGGGGAAACAGAGCTAGCCGGAGTGCTAACAGAAGTGACAATAACCCAGCCCTCTCACGTCCGACGACCAGACGTTGGACAAGGAGTTGAAGGGATGTCGAAAAGTGAGACAGAGGAGATGATTGAAATTGAGATTGATGGACGGGAGAAACAGGAGTGTTTAGAGGAAGGGATCGAGGAGCAAACCATCACAGCAGCTGAACTGATCACTCAGGACATTGACATCAATGAGCCGATCGGAAACCTGAAGAAGCTGCTGGAGCCTCGTCTTCAGATCCCGCTGGATGGATATGACATTTGTCTGCAGGACATCCAATTGCATCCTGATCACAGCTTGTTCGATCAAGGAGTGAAGACAGATGGCACAGTACAGCTCAGTGTGCAGATCGTCACGAAACCCGGTGAAGAGAAGCTGAATATTCTGGAGATTGTGAAGCCAGTGGAAACAGTGGAGGTGGTGATCGATCCAGATGCTGCTGCTGGCGAGGAAGCTCATCTGGTAGAGGATGGACAAGTGATCGCTGTGGAGCGAGCGGCCCTTCCTGATGAGACCTCAGAGCAGGTGACTCGCTGGGCGGCTGCACTAGAAGGCTACCGCAAGGAGCAGGTTCGACTGAACATTCCCTATGACCCCGTGCAGTGGACAGCAGATCAGGTTATCCACTGGGCAGTTTGGGTGATGAAAGAGTTTGGCATTGATGAAATGGAGGTGGGTGGCATTCACATCCCGGGCCGGCAGCTCTGTGGCTTCAGCCAGGAGGAGTTCCTGCAGAGAGTGCCCAGCGGCGAGATCCTGTGGAGCCACCTGGAGCTTCTGCGCAAGTATGTACTTGCGAGTCAGGATCAAAGTCAGGAAGCTACAGTCACCATTGATCAACCGGTGCAGATCATCCCTGCTCCTGTGCAGCAGGCCACACCTACAGCCATTAAAGTGATGAAGCACAACAAAACACCACGAGCCCCTCGCATCTCAGGAGAGGAGCGCAGTTCCCCAGGCAACCGCACAGGTAACAACGGTCAAATTCAGCTGTGGCAGTTTCTCCTGGAGCTGCTGACGGATAAAGACTCTCGCGACTGCATCTCCTGGGTGGGCGAAGAAGGCGAGTTCAAGCTCAATCAGCCGGAGCTGGTGGCTCAGAAATGGGGTCAGCGCAAGAACAAGCCCACCATGAACTACGAGAAGCTGAGCAGAGCTCTCAGGTACTACTACGATGGAGACATGATCAGCAAAGTGCAAGGCAAGCGATTTGTCTACAAGTTTGTGTGTGACCTGAGGACTCTGATTGGCTACAGCGCCGCCGAGCTCAACAACCTGGTGACGGAGTGCGAACAGAAGAAGCTGGCGCGGGTGCAGCTGCAGGGCCTCGGTCAGCCTGTAAACACAGTCACTCTGGCCACCGCCACAGGTCAACCCGTCACCACAGTTACTCTGGCCGCCGCCGCGCTGGACAAAGACAGCTGAGGAGAGACTCCCAGCCAATCAGGAGGAAGACAGGAGCAATCCGGGTTTGATATTTGACTTTGGGCCGGGGTGGGAGAACAGCGGGTTTGTAAGCAGATGTGcgctttgtgtgtgtggatgaatgaatgtgtgtgtggatgtgagaAAAGTATAGATGATCACGTATGAGCTTTCAGTTTTTTGTATGCTTGTTCTCCGACTGCAGGGTAGCATCGGCTATATTTCCATTGTATATAACTCTATGTTTTTGATAGCCACGTGGGCGCAGTGTATTTTGATATTTTCCATTTGTAAaggatctttttcttttttcctttttattttcgaGTGTCCGATTCCCTCAAGGTGAGGTACTTtttactgtccaccagagggcaATAAAGAGACAGTTGGTTTTTTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-011010-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell. Orthologous to human GABPA (GA binding protein transcription factor subunit alpha).

Ensembl:

ensembl_id ENSDART00000100700

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073399 lncRNA upstream 4332 35006091 ~ 35010396 (+) True XLOC_037298
TCONS_00075166 lncRNA upstream 41404 34970843 ~ 34973324 (+) True XLOC_037297
TCONS_00073393 lncRNA upstream 54954 34950942 ~ 34959774 (+) False XLOC_037295
TCONS_00073391 lncRNA upstream 186630 34822849 ~ 34828098 (+) False XLOC_037294
TCONS_00073406 lncRNA downstream 787 35026304 ~ 35030107 (+) True XLOC_037299
TCONS_00075167 lncRNA downstream 52033 35077550 ~ 35081996 (+) False XLOC_037300
TCONS_00073408 lncRNA downstream 54053 35079570 ~ 35081230 (+) True XLOC_037300
TCONS_00075168 lncRNA downstream 135127 35160644 ~ 35163664 (+) False XLOC_037301
TCONS_00075169 lncRNA downstream 135181 35160698 ~ 35167934 (+) True XLOC_037301
TCONS_00073398 mRNA upstream 4981 34996245 ~ 35009747 (+) False XLOC_037298
TCONS_00073394 mRNA upstream 46299 34950942 ~ 34968429 (+) False XLOC_037295
TCONS_00073396 mRNA upstream 51759 34952269 ~ 34962969 (+) True XLOC_037295
TCONS_00073395 mRNA upstream 52003 34952203 ~ 34962725 (+) False XLOC_037295
TCONS_00073389 mRNA upstream 367033 34641237 ~ 34647695 (+) True XLOC_037292
TCONS_00073407 mRNA downstream 52029 35077546 ~ 35081981 (+) False XLOC_037300
TCONS_00073410 mRNA downstream 806777 35832294 ~ 35842375 (+) False XLOC_037303
TCONS_00073411 mRNA downstream 806853 35832370 ~ 35836174 (+) True XLOC_037303
TCONS_00073412 mRNA downstream 818215 35843732 ~ 35865528 (+) False XLOC_037304
TCONS_00073413 mRNA downstream 835458 35860975 ~ 35863572 (+) False XLOC_037304
TCONS_00073397 other upstream 45161 34969450 ~ 34969567 (+) True XLOC_037296
TCONS_00073390 other upstream 223841 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073386 other upstream 585508 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073385 other upstream 585608 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073383 other upstream 585616 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073409 other downstream 403685 35429202 ~ 35429316 (+) True XLOC_037302
TCONS_00073415 other downstream 836567 35862084 ~ 35863842 (+) True XLOC_037304
TCONS_00073420 other downstream 1768867 36794384 ~ 36795322 (+) False XLOC_037311
TCONS_00073421 other downstream 1769202 36794719 ~ 36797775 (+) False XLOC_037311
TCONS_00073422 other downstream 1769202 36794719 ~ 36797828 (+) False XLOC_037311

Expression Profile

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