RNA id: TU41994


Basic Information

Item Value
RNA id TU41994
length 2907
RNA type TUCP
GC content 0.48
exon number 1
gene id G31602
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 32891499 ~ 32894405 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGAGAAGATGTCATTTTTGCACGTAAAGATTTTTGCATCCAACAGATGCCACAACATGGCCATGACACCTTTTGACAAGAGTTAGGCTGAAGAAAATCCTGTTTTTgctagaaaaataaattaaaaagcgAGAAGAATAtgcaatacatttttactttaaagttcaagcatttttttacaaaaatacagcATCAGTTGATTGAAATATTGTAATATGTATATTAAGTCTAAATAAGCAACTGCTGAGCAGATTAATCTGCACATTTACATCAGGAAATATAGGCCTTAACGAAAAAATGTTGACACTATGGAAACATTAAAATTTAGACAGAGCACACTTCCATATTCCCATTAACATCATGCTTTATGTTAGTGCTTTTAAATATCAGAAGTAAGAACTTACACCAGAACTAAGCTATTTCAGGTTGTAGCTCGGCAAAACAATGATTTTGTCACTTTCATTAATCTCCCTTTCACTTTATCCCAGTTAGGAATGTTTGAATGAAACGAAAATtaccagttaacttaatttaaatttgcaagaccaggcttaaatgaactgacaacataagttattatacgacttacagttctcaaggacgtacacacacgatctcaactggctagttatccttgtgtgtccgcgctattctccgacttgcactctaacaatgcagccctatttctggtaccgtggggggcagaaatgttgccgtggggggccacTACAGTCAAATCaccatagaggaaacactgaaagTAGGGTAAAACAAAATTCACACATTTTAGTAGAATTTCCATCCTCTGTACGATCAACCATAAAGTTGGCAATTTAATTAATTCTTACTTCTTTAGTCATACTGGCCAAAGAAAAACAGCCTACTTTAATTCTGTTTCGAACAAATCTGGCTTACCATTTCTGCTGACAATGTTTTGTACATTTAGAGTTTGTCATCCCAACACAACACGTACGTAGTAACATGTCCCACcagaagcttttaaaaaaaaaacaacacttctACTCCTCTGCCTCTACTACTTTGGGTTTTGGCTCACGTATATCAGATTCCATCCCTGGCAAACTACTTCTCCTACGTGCAGCTGTCTCAATATTTTGCACCAGCTCCACATCCCATGGATGAGTGACAAAGCTGAGCACCtccccatcctccacccctCCTGCCCTCCCCACTCTCCCTGCCCTGTGGATGTAGTCTGTGTGGGATTCCGGGCAGTCATAGTTGACAACCAAGCGCACCCGGGATGTGTCCAGGCCACGTGAAGCAACGTCTGTGCATATCAGCACATCGACCAGGCCCTTCTGGAAGGAGTGGAAGATTCCCGAACGCACAGCAGCAGGCATCTCCCCTTGCAGCCGTGCGTGCCGCACCCCCATCTCGTCCAGCGAGTACCCCATCCAGTTGACGGTGGGGGACTTGTTGCAGAACACCAGAGCCGCACCCCCTCCTTTTTCCTGTTGGAGAAGCTTCAGGGCTTGGTGGAGCTCCAGGATCTTGTCAGCGCCCTTCACCTTCAGAAACGTCTGCTTGACGTGTGGCATGAGGAAGTGCAGCATCTTGCTCTTGATCACCACCATGCTGCCAAGGTCTGTCACCTGGCTGAGCACTTCCCCGACACCCCCAGGGAAGGTGGCCCCCACCACCAGCAGCTGGGCTTTACGGCCTGGGCCTTGGGTTTCCTTGGGATCGCTAGCAATGTTGGCGTGGAGCAGGATGTTCTCCAGCATGTCAGAGAAGCTGGGGTCGAACATGGTGTCAGCCTCGTCCACCACAAAGAAGCTCAGCTCACTCAAGTCCACGAAGCGTCTCCGCAGGGCCTTGACCAGAGCGCCCGGTGTGGCCACTAAAATATCCGGATGATCCTTCTTGACGACCGCCTTGATGTGTCCTACACCCCGCCCGCCACCCACAGTCCTGGCCAGTAGGCCAAATGGAGCACACAGAGTCCTGGACACGGCCGCCACTTGCTCAGCTAGCTCTCTGGAAGGCACAAGAACCACAGCGCAGATCTTGCGTGCGCTCCCAGCGTACATCTCCGACTTCTTCTCCGCTTGCAGCCTGTGAACAATAGGCAGGAGGTAAGTCAGCGTTTTGCCACTGCCCGTCTCCGCAGCACAGAGAACGTTGTGACCTTTCAGGGCCTTTGGGATGGTCTGCAGCTGCACAGTGGTGGGATGGGTAATGTGGATCTTGTCCAAAGCTTCCACCAGCTCCTTGCAGATATGGAGGTTACTAAACGTCGGCGATGCTTTCTGTTCAGCATCCTCGTTCTGGTTATCAACAACGAAAGGTGCAACGGTCTGGGTGTTGTTGATGGTGAAATAGTCACCAAATGACTTGTTATGTTTCCACCCTTTGGAGCAGAGATTGGGCTGCTCGAACTTCCCAAGAGTATATCCCGCCGACTGGTTCAGATCAGGATCCTTGCTCTGAATCAGGAGCTTGCCGGCTTTGATGGTGTTGATCTTGTTTTTGCCTCGAGTCTGTTTTGCACTTTCAATGTGCTTCTGCATGTAGCGAGGAATGCGGATGACTGTCTCTTCTGGCGTGGCTGCTGTTCGGCAAAAGCGAGTCTGACTGACAGCACAATGAACACGACAGCAGGCGGACACTTTAATAAAGTCACCACAGTAAAGTCCACTCGAGCAGAGAGCTCGCCACGCAGCCGAAGCTAAATAGCCGACCTTCACAGAGTGCATTTTGGTGTTGAGCTGGCTCGCTATACCTGCTAAGATCAGCCGACAAGGATTAAATCGCAAACAAAGGACTGGACCAAGAAGGCGAGGCCAGTTTTGTGCACCGGAAAGCTTTAAAAGTCACGCTGAATGTTCAAAAACACAGTCAATCTGTTATCGTCCTGCTTCATTTGACAGCGGTAGCGCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41984 lncRNA downstream 74181 32815237 ~ 32817318 (-) True G31597
TU41976 lncRNA downstream 105302 32785782 ~ 32786197 (-) True G31589
TU41964 lncRNA downstream 139360 32751110 ~ 32752139 (-) True G31581
TU41962 lncRNA downstream 140751 32750531 ~ 32750748 (-) True G31580
TU41958 lncRNA downstream 140977 32685389 ~ 32750522 (-) True LOC120556040
TU42024 lncRNA upstream 40306 32934711 ~ 32997421 (-) True G31624
XR_005638752.1 lncRNA upstream 83531 32977936 ~ 32979391 (-) False LOC120555772
XR_005638751.1 lncRNA upstream 83661 32978066 ~ 32979392 (-) True LOC120555772
TU42039 lncRNA upstream 118475 33012880 ~ 33018742 (-) True G31636
TU42059 lncRNA upstream 187317 33081722 ~ 33084480 (-) True G31650
XM_039795007.1 mRNA downstream 5630 32817597 ~ 32885869 (-) True nfatc3a
XM_039795006.1 mRNA downstream 13545 32817597 ~ 32877954 (-) False nfatc3a
XM_039795303.1 mRNA downstream 117777 32763628 ~ 32773722 (-) True LOC120556015
XM_039795372.1 mRNA downstream 130393 32756857 ~ 32761106 (-) True gnpnat1
XM_039794372.1 mRNA downstream 717951 32169844 ~ 32173548 (-) True nudt19
XM_039795629.1 mRNA upstream 314739 33209144 ~ 33214697 (-) True tspan3b
XM_039795630.1 mRNA upstream 315911 33210316 ~ 33214699 (-) False tspan3b
XM_039795499.1 mRNA upstream 324589 33218994 ~ 33219856 (-) True nmbb
XM_039795878.1 mRNA upstream 327905 33222310 ~ 33230983 (-) True sec11a
XM_039795953.1 mRNA upstream 342889 33237294 ~ 33250606 (-) True alpk3b
TU41279 other downstream 2359383 30530751 ~ 30532116 (-) False fam120b
XR_005638738.1 other downstream 3430263 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 3622335 29257978 ~ 29269164 (-) False LOC120555471
XR_005638770.1 other downstream 4044534 28770001 ~ 28846965 (-) False mafa
TU42136 other upstream 447842 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 544058 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 912531 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other upstream 912531 33806936 ~ 33816370 (-) False LOC120555494
TU42453 other upstream 1596255 34490660 ~ 34599541 (-) True G31955

Expression Profile