RNA id: TU42136


Basic Information

Item Value
RNA id TU42136
length 5622
RNA type TUCP
GC content 0.40
exon number 3
gene id wdr76
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 33342247 ~ 33353448 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcactgcctctccttgatttcatgttgtttatggagaaggagaaccaagAAATAAGTAAGGGGAAAAGCAATGCTACCAAGCCCCGACGTGCGTCGCCACGATGCGTTGTTACAGTTTTTGAGAGATGCGCGTACGGCTACAGcatagggtccggcgtaggttGGTGTCTCCATGTACGTAGCTacggcgtagatttaacgcagaagtaTAGATCACGCTTAACAATAACCGTAAGGGTGAACAATTtcatttaatgttaaacatttcataaacatgCAACACTGGTATTTCATTTCTCTGCAGAAACTCCCACGAGTCCATCCACTCATTGAAATTCAAGCGGTCTCTGCTTTGTGTTAGCGTCCACCCTTTACAGAAGCAGTACTTTGCTGTTGCAGAAAACGGGATAGTGAATATTTATGACAGCAGATACCTGAAGGAGAAGAAAAGCAAGACTGTCTCCCAGCTGCATGGTCACTCTTTAAGCATACACGGTGCTTATTTCTCCCCTCGTACAGGCAACCGAGTGCTCACCTCCTGTATGGATGGCTACATAAGGTGAAGCCAATTCAGCACTTTGAATAATTGTTGTACTTATTGTAGTTTACTTTTCAATACCAGCTCAATGTATACCCATAACTCTTTTGACAGGATATATGACACATCTGCAATGACTAAGAAAGCTCCCTTGCTGACATCCATCAGACACAAATTGCAAACGGCCAGCTACAGGACCAGAGTATCAGCCGTGTGGGACCCCAAACAGGAAGACTGTTTTGTGGTGGGGAGCACGTCAAAGCGTCACATTGTGTTGGTGTTTCATGAAAGTGGCAAACTCCTGCACTCCTTCGTAGATCGTGATAACGTTACCTCAGTGCTGTCCGTGACTGCTTTTCACCCCACAAGGAATGCATTGCTGGGCGGCAATGCGTCAGGACAACTGCATGTCTTTTCAGACTGAGATGGAGGCTAAAGTATGTGACCAAGACCCCTGATTGCCTTCAGTTGGGTAGGAAGAACAAGAAAGGAAATAGTTTTGTTACAGTCAAAGTTTACAACTTGTACAGTGTAGATGGCCAGCTGGAAATTATTGTACATACAATGTAGGTAGCAGATGAATCACTCTTGACTTTATCTCTGCTGCTTGCTTTTCTGTTCTCAGATTTGCAATTAGTTTGACTCTATGTCTTATGTAATAACTTATACATTTCTAAAATATGTTCCCTGTTGTCAAATTGattaatcaatgttttttttagtggCTGCTGAAgcaaataaaactttttttaaggttttgatAGCCAACTTTTTGAGTGTGCATGCTATTAATCTCGGCAGTGGTAGTATCATTGTCCCCTTTAGATGGCAGCATTCTGACAAAAGAATAATTTGTGCGGTGATTTATTTTCAAGCAGGGACGtgctaaaaacattcaaaaggtGCTGATTTGGGTTTTCCTTCTCTGAATTCAAGATTAAACATGTAGCTGGCAGATGTCAATAATAGGTCATATTTGTTTattcataaataaattacactAGTCTTAAGTCAGTGATTGGAAATAAGCAGTCTTGTTTGGAGGTAATAAATGCAGAACACATGCTTACAGACATTTCCATGTGCAATGCCATGGTACAGGAAGGATGCTTACAGTAAGACCACATCAGAGACCTCATTCCTGTTTACATGATTAAGTAAAATCAATACGAGAGTTGCCTCTTAATGGAACTGTCATCCGTTCAAGTTATTTGAAACCGATTTTagcaatacaaaaaatatatttaactgCATTGCAAAAAGAAATATTCAAGTAGTGGAATACGCTACTTCTGCTGTTCTTTAAATTGGTTAGATACAAACTGCTCCACTTTCATTTTGGTAAAATCTGTTCAGAGTTAAGTGAAAATGCGTCTGTCGGGTATTCAGTTCATCAACACGTACGTTCACAAGACAACTTGCATGTACTTTGTTTCTCTAAAAATGAGTCAAGGAAGCATTCTAGGATTAAGCAACAATCAAACAGGATTTGGAGGAGAACTTTACCTACCACTGTGGGTAATCGGAAACGGTGAGCACCATTCCCTTCACACATCTACAGGACGTTTACCTTTACCATTCAAAAGACATCTTGAACGCCTAGCAGACAGACATTAATTTGCTAGTTTATGGATATTGAAATTCATTACATAGTTATATTTATTGCTCAAATTATGTTGTTAGGTtcatacaaataaacaaacttTAAAGTCTTTAAAGACTTTAAAGTTCAAATGATAGGAAGTTAAAAAGTACATCCGAGTTAGCAGACACATAAGTAATTAAGTCTTAAAAAACCAACCACAAAATTAGTTGGGTTTTTTATGAAGAATAAATGGGTCGTTAAATATttttgtctaactcctccaaCTTTGAACTAAAAGAAAATGCAGAATCAGTAATACTTCTGGTTATTTCACCAATTTCTGAagttaaaaaatgtcaataccgtacaaaaataaaatctaaatttgAAGCCTGGTACTACAGGGTCTCTCAAATGAATCAAACTTTGAACCTGTGGATTTTAATATGAATACAGTAACTTTCCAAATTGCCTATAGGAGCCTCCTAAACCCCTCAGTTAATCAATGTCCTAACCATTCCTTTTGTTGCATAAATATTGCATCCAATTTATTTTAGGTATGATAAATGCCTGCTGATCAGTCTATAATTACACCAACATATACCCTAGTCCACCACTTGTAGGTTTGTTGAGAGGTCCAATAGTTAACAAACTATGTAGTTTAAAAGATGCTGTTGATCGCTCTGGGCTGTAAAGATGCAATGCAGGCTAACCTGTGAAATAACATGCGTGCTAAGGCTGGAGAAGGAGAGCAGACTATTAGTTTCCATCTGTTGACGCAAActgacagaaatatcagacaacAGAGGATTCTTTGGTAGGTGTGATGATGAAGATTGCAGTAGAGCGTAAACATGACTTATCTCAGTTTCTCTTGTAAGCTGAACACTATACatccactgtaaaaaaataataatgcttTAAGTCCATTAAAAGTCGCAGTGAGGAAATCTGTTAATGAGACATCAGTTTGTACAAAAATGCAAACATGATATTAGGCCTTTACAGATAAATGCATACATTTGAACACAGCAGGGCTAAACTTATGACCTTTTAACTCAACATGAATCAAAAACAAGCCCTCTTAACTGTTTACTGTGGGGAAAATAGCACAAATTGTTGTACTTTACAAAAGGTAACGGATAGGATcttgttttttatattaacattaTTGCACATCGAGAAACTCGTTCTACAGAGTGGAACTCAAAGAACTAACCACTTTACTATCACTACAGCGCTAGCTAGCTCACATAGTACCATCACCTTTTCGACTATCATAAAAGTAACTACTGCAAAGTGACAACTGTTCCTTACACACAGAAGTTGATTGTAGATATATTAATTATTTGGCTGCTATTTTATAAAATAAGTAAACCTACCACCTCCATTACCTACTTATATCCTTACAATTATCTGTAATTTATAGTAATTTGACAAAACTTTATTGGTGTTCTAATGGCTGGACAAAAATGGGAACGTAAGCACACTGGACGTCTGACCACAAACTAAGTCACACTTGTGATAAAATGATAATTCAAGCCATCTGACAGAGCAGCACCCACATCACTCCTGTGTCAAATAGCTGCTGAAGCTGATTCTCAGCATTTGGTTAAATTACATAGCCCACATGTTAGGTTGTATACCACATCACGACAATTCAGGGAAGTCAAGAAGTTTTCAATCATCTAAAAGTGTGCTCAATGTTTCTATTCTTATAATTGAGGTTCTAGACCCAACTATCTTTCCGTCACTGTTTGAACACTTGCGTATCGCTCTACATGGCAAATTCCATATATGGctaaacattttagaaaaccaaTTATAATATTTGGAAATATTATTTGACTCCGGAGGACTGATCTACATTCGGTAAGTGCTGCTTAGTTTTCCATTTCGCACTTCCTCCAACCCCCAGATACAGATACTAGTACATCTCAAAACAGCAGTTTTAAATCCCATCGCCGTGACCATAATAACATTTGATCATGAATGCTGATGTTGGCTTTGAAATATGAAATGTAGATGAGCTAGACTGGCTCTCATCTTCGTTCAAAACTTCAACTCAAACTCTCAGGTTTCACAACACCCCCCAACACATCAGGTCATTCTGTCTTTCAATAATGTTGCAACATATcaattaatacaaaaataaaggcAACTATCATCTGTGGTAAACTAAGTGAAGTCTGTCAGACTTGCTTGTCCCTTTCAGTGTTTGAATTTAACCCTGATGCTGTGGctttgtgtaaaaataaaatgtcttgaAATGACCTGAATTTCCAAAGTAAAATGTGATTTCCTTTGCTCGCAGTGATGGTCAAACATAATAAACGAGGCTCTTCAGGGGACAGTCCGTGGCTTGGGACAGGAACTCGTTCTTGGGAAAAGCAGAGTTGATATTAGGAATAGGGATGCCATCACTCCTCCTCCCACCCTCTCTCTTGTAAAGTATGTGTCCCATATTCATCAGTAGAAGCCTGTGTTGTGTCATTCAGTCTCTGCATCAGTTGCTGATGAGGAAACCTCCCATCCACCGTAACTTACAGGCAAACCAGCGCCGCAGAGGGCAGAAGTATTCAAAGTGGAACTGCTGGAATTCAGGTGTCTTGCGGATGTCTCTCAGGAAGGCAATGTCCAGGTCTGACTCTGTCAGCATgatgaggagcagcagcagggcGAACAGCAGTCCAATGGTAACCAGGAACAGACGCAACACGCTCAGGATGAACTTGTTCAGCTCCTCCACGTCGCTCGGTGGCGATGACCTGCCCCTGACAATACGCAGTGCCCTCCTGCCGGAAGAAAACTCCGCTGCGTGGCCATCCTTCGACGTGCCTGCCTCGGACTCCTTCTCATCGTTGCTGCAGGCGGCACCGTTAAGGTGACGAGGCAAAGGCATCTCCATCCCGTGTTCGGCCACAGGTGTGGGCAGCACGCTGTCGGAGGGGCTGTAGGCCTCGTCTGAGATGACTGCTGACGTGCTTGCCTCGCTGCCGTCCATCATGTGGCCCCGAGAAGACATGAAGGAATCGCCATGGGAGACGGATCGCACAGGTGTGGAGTGGGCGCTGTCTCGAAGGGACTCCAGACCTGAAAAGCCACAGCAGAGGAAGCCAGTTCATAAGGGTGACATGTTTAATAACTTGGAGGTATTGTTGCAAGACACATTCACATTTAAAGAGACTCTGACATGACTTTCTTATACCTCAGACCTCATAAAACTCATGAGAAATGTATTCTGCCTACAAGTCATTGATGCAAATGTCTGACTATATAGAACCTGTCCCTGTTCTTTAAGCGATTTAAAAAGAGGTTTAAGGGAAAATGATGTTCAGATGGAGTTTAATTAGTCCTAAAGCAGAGAGTCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42127 lncRNA downstream 6842 33333954 ~ 33335405 (-) True G31707
TU42126 lncRNA downstream 8309 33333098 ~ 33333938 (-) True G31706
TU42125 lncRNA downstream 9228 33329613 ~ 33333019 (-) True G31705
TU42124 lncRNA downstream 76572 33265318 ~ 33265675 (-) True G31704
TU42052 lncRNA downstream 245269 33095621 ~ 33096978 (-) False LOC120556104
TU42221 lncRNA upstream 218336 33566426 ~ 33569379 (-) False serf2
TU42292 lncRNA upstream 366210 33714300 ~ 33715276 (-) True G31820
TU42296 lncRNA upstream 368629 33716719 ~ 33718580 (-) True G31822
TU42348 lncRNA upstream 507808 33855898 ~ 33856166 (-) True G31862
TU42371 lncRNA upstream 831815 34179905 ~ 34180494 (-) True G31881
XM_039795559.1 mRNA downstream 79314 33254629 ~ 33262933 (-) False cry5
XM_039795558.1 mRNA downstream 79666 33254629 ~ 33262581 (-) True cry5
XM_039795953.1 mRNA downstream 91641 33237294 ~ 33250606 (-) True alpk3b
XM_039795878.1 mRNA downstream 111264 33222310 ~ 33230983 (-) True sec11a
XM_039795499.1 mRNA downstream 122391 33218994 ~ 33219856 (-) True nmbb
XM_039795564.1 mRNA upstream 5771 33353861 ~ 33360306 (-) True LOC120556152
XM_039795561.1 mRNA upstream 14722 33362812 ~ 33390311 (-) True LOC120556151
XM_039795563.1 mRNA upstream 14724 33362814 ~ 33382015 (-) False LOC120556151
XM_039795562.1 mRNA upstream 14725 33362815 ~ 33381956 (-) False LOC120556151
XM_039795565.1 mRNA upstream 64575 33412665 ~ 33418903 (-) True si:ch211-107o10.3
TU41994 other downstream 447842 32891499 ~ 32894405 (-) True G31602
TU41279 other downstream 2810131 30530751 ~ 30532116 (-) False fam120b
XR_005638738.1 other downstream 3881011 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 4073083 29257978 ~ 29269164 (-) False LOC120555471
XR_005638769.1 other downstream 4495282 28770001 ~ 28846965 (-) True mafa
XR_005638776.1 other upstream 90373 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 458846 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other upstream 458846 33806936 ~ 33816370 (-) False LOC120555494
TU42453 other upstream 1142570 34490660 ~ 34599541 (-) True G31955
TU43972 other upstream 7300586 40648676 ~ 40662621 (-) True G33122

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2320355 False 1682 TUCP 0.46 1 NC_048590.1 39229129 ~ 39230810 (-)