RNA id: TCONS_00007140


Basic Information

Item Value
RNA id TCONS_00007140
length 3274
lncRNA type lincRNA
GC content 0.36
exon number 2
gene id XLOC_003676
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 41192329 ~ 41201272 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACTACAGTAGCTGATATTGTTTCAGTTGTAAACTCAGTCATAGATGATGTATTCTGCTCTGCTGTTGTTGAAGAAACCGGAGATGGAGAGGTACCGGTTGTGTATAGTGTTTCCATTGTAGAAGATTTCGATGTGATTGTAGTCCCAGTGGACTCTTCTGTTGTGAAGGATGTTGATTCTGGTATTGTGGGGGAACTATCAGGACTGGTTAGTTCTACAGTAGCTGAAGTTTCTGTTGTAAACTCAGTCATAGATGATgtattctgctcttctgttgtTGAAGTTACCGGAGATGGAGAGGTACCTGTTGTGTATATTGTCGTTTCCATTGTAGAAGATTCTGATGTGATTGTAGTCCCAGTGGACTCttctgttgtgaagggtgttgaTTCTGTTATTGTGGGGGAACTATCAGAATTGGTTTGTGTCTGTTGGCTTGTGGTTAGTTCTACAGTAGCTGATATTGTTTCAGTTGTAAACTCAGTCATAGATGATgtattctgctcttctgttgtTGAAGTTACCGGAGATGGAGAGGTACCTGTTGTGTATAGTGTTTCCATTGTAGAAGATTCAGATGTGGTTGTAGTCTCAGTGGACTCTTCTGTTTTGAAGGGTGTTGATTCTGGTATTGTGGGGGAACTATCAGGATTGGTTTGTGTCTGTTGGCTTTTGGTTAGTTCTACAGTAGCTGAAGTTTCTGTTGTAAACTCAGTCATAGATGATGAATTCTGCTCTTCTGTTGTTGAAGTTACTGGAGATGGAGAGGTACCTGTTGTGTATATTGTTGTTGCCATCGTAGAAGATTCCGATGTGATTGTTGTCCCAGTGGACTCttctgttgtgaagggtgttgaTTCTGGTATTGTGGGGGAACTATCAGGACTGGTTTGTGTCTGTTGGCTTGTGGTTAGTTCTACAGTAGCTGATGTTGTTTCAGTTGTAAACTCAGTCATAGATGATgtattctgctcttctgttgtTGAAGTTACAGGAGATGGAGAGGTACCTGTTGTGTTTATTGTAGTTTCCATCGTAGAAGATTCCGATGTGATTGTAGTCCCAGTGGACTCttctgttgtgaagggtgttgaTTCTGTTATTGTATGGGAACTATCAGGACTGGTTTGTGTCTGTTGGCTTGTGGCTTGTTCTACAGTAGCTGATGTTATTTCTGTTGTAAACTCAGTCATAGATGATGTAGTCTGCTTTTCTGATGTGGAAGTTCCTTGAGATGTAGAGGTACCTGTTGCGTATAGTGTAGTTTCCAGTGTTGGACCAGTTTTCTTTGTAGATGTTTCAAATGAGGTCACAGGGAACTCGTCTGTTGTAAGTGATGTAGATTCTGTTTTTGTGGTACAAATAGTAGGGCTGTTTTTTGTCTGTTGGCTTGTGGTTTTTTCAGCAGTAGCTGAAGATATTTCAGTTGTAAACTCAGAACATTGATCTGTTGTGAATAAAGTAGTTTTAGTCGTAGTATACcaaattatttataacatttaattataGAGCTGTGAACAACTGCACATTTAACATACCATGGATTAATAATTGCATGAGTTTTACCAAGATAACATCAGTCTTTGTACTAGATTGATGCTACTGTATAACAGCTACTATCAatcattttaagttttaaaatgtgCTATTATTTTAGATGATTACAAAGATTGTTTTATATTGAAGACATTGGGTACATTATGAACTGTACTTGTATTACTGGAAGATGTGAATTGAATTGTTCAATCGTTCATATATTACACAATTCCACTTAAAGAATAGCCAGTTTCTATTGTAGTTTCAGTGTCTTTGTTTATCTTAAGCCATTATCATTTTTGGTTGTCACATTCATCTTTTAACTCCAACATACATTTTAGATTGATTAAAATGTGGAGATAATCATTAAAATTCTGTAGAAACTTACCTGTGTTTGCTCCAATGCAGATGAAATGCAGCAGCAGAAGTAAGGCAATAAAGTGCAGTATTTTCCATAAATACATGTTTAGAAAGTTCCTGTAAGATGGTTGTTTTTGtttgaaatgaaaatgatttaGCCAATTGCAAATGCACCAGCCATCAGTGTGTCTCCTCTGTTAAATTTCAACATCAACCAGCAACAAGATGTGTGCATGCTCCCTGCAAACAATAAATGTCATAAGGTATGGCCTCTTTTGCATTAAAAACCATGTTCACACCTTAAGTAAACCACAGTACGCTGATTGGAAGTTTATGTGGTTTTGAAAGGTCAGAACAGTTATATGACCTTGTCTTCTTGTTACACCCTTCCCAAGAAATGAGAAAAACATATACTTTcactttttcatttgtttgtctttTTCAAAATAGTATTTGCTCTCAGTTGTGATATGTACATTTAAGACAATAAGATCTGTTTAACCAGACATTAGGAAAGATTGTGTACACACATTACAATAAACCACCAAAGTTTTACAGTAAGTTCAGTGCCAATTTCAGTTTCAttcactgcattttatttagaaaatctGTGCTTGTACTGTTATCTAACTAATTTTTGCTAATTATAAATGATTTAAGGTACTGAATACAGCATAGTTAaacaacatacaaacaaaaaaagccaaTTACCTGAAAGTTAAACATAGTTAGATCCAATAAAGTTGTTTCTCAACAATATAATCCAGGTGATTAGAATCTCTGAAAGCAGTGATTTCTTGTTTACTTATATTTgaagtatatttttgttttgttttgtagccTAATAGACGATGGACTGGAAAATCACTCTATAATATTTCACTCTATCATGTTACAACCCTTCAGGAACTAATAGGTTGAACAGTTAATCCTGCAAACGTAACCGCTTGTTTGAACCAGTCAGAATACAGGAAATAAACTGATATGTTTCAGAAGTTGCTGTGTGGTTGCTATGTTATCTATAGACATTGATGGGTCACTCCTTCAATGTAGGTCTGTGTGTTATCGTATGCCAAAAGTCGTAAATCAGCACCACTCTTCAACAAGTCATAGGATTTTGGGTAGCACTCATGTCCATCACTTGAACAATGCAGTTCCTGAAACATAATACTTAATATTGTAATACTTGGTAACGTTGGTTTCTTTTGTTCTTATGACGTTCTATAAAAAGCAGTGCTCACTTTGTTTTAATGAATTTCGCATGGCAACCACAGGAAAACAATGGCATTAAATATGCTCTTGGCATTAAATATGTTCTTGACCTATGGTCACGTTCTCCACACCTGTTTgctatttcaaaatgtttttgagTCATAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194148

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008682 lncRNA upstream 236206 40948472 ~ 40956123 (+) False XLOC_003671
TCONS_00008681 lncRNA upstream 239449 40948472 ~ 40952880 (+) False XLOC_003671
TCONS_00008677 lncRNA upstream 242182 40891681 ~ 40950147 (+) False XLOC_003671
TCONS_00008679 lncRNA upstream 242182 40902150 ~ 40950147 (+) False XLOC_003671
TCONS_00008420 lncRNA upstream 243224 40944767 ~ 40949105 (+) False XLOC_003671
TCONS_00007142 lncRNA downstream 22213 41223485 ~ 41235090 (+) True XLOC_003677
TCONS_00008422 lncRNA downstream 258576 41459848 ~ 41473741 (+) True XLOC_003679
TCONS_00008683 lncRNA downstream 731828 41933100 ~ 41934619 (+) True XLOC_003684
TCONS_00008423 lncRNA downstream 812731 42014003 ~ 42017313 (+) False XLOC_003687
TCONS_00008424 lncRNA downstream 812756 42014028 ~ 42018127 (+) True XLOC_003687
TCONS_00007138 mRNA upstream 34375 41135055 ~ 41157954 (+) False XLOC_003675
TCONS_00007136 mRNA upstream 86697 41090440 ~ 41105632 (+) True XLOC_003674
TCONS_00007135 mRNA upstream 87686 41089574 ~ 41104643 (+) False XLOC_003674
TCONS_00007134 mRNA upstream 124540 41064822 ~ 41067789 (+) True XLOC_003673
TCONS_00007129 mRNA upstream 344714 40812590 ~ 40847615 (+) False XLOC_003668
TCONS_00007143 mRNA downstream 41372 41242644 ~ 41372948 (+) False XLOC_003678
TCONS_00007144 mRNA downstream 41822 41243094 ~ 41286090 (+) False XLOC_003678
TCONS_00007145 mRNA downstream 41822 41243094 ~ 41308742 (+) False XLOC_003678
TCONS_00007146 mRNA downstream 41822 41243094 ~ 41364446 (+) False XLOC_003678
TCONS_00007147 mRNA downstream 42053 41243325 ~ 41285885 (+) True XLOC_003678
TCONS_00007137 other upstream 34401 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other upstream 34403 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007131 other upstream 303035 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007127 other upstream 536458 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007097 other upstream 2388591 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007149 other downstream 263835 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007172 other downstream 1424099 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007182 other downstream 1843554 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007198 other downstream 2823490 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 3123489 44324761 ~ 44326292 (+) False XLOC_003732

Expression Profile

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