RNA id: TCONS_00007151


Basic Information

Item Value
RNA id TCONS_00007151
length 1587
RNA type mRNA
GC content 0.54
exon number 14
gene id XLOC_003681
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 41540862 ~ 41699904 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTGCGGGCGGGTACGCGGGGGGGACCGTTGGGCGCCGGAAATCCATTCTCCCCTCCGAAAATCTGCAGATCCCCAAACCGGCGGGGGCGAGCGGCGTACGcaagagcagcagcagcagcagcggagGCAAGATGCTGTCCATGTCCTACAGCGAGAGTATTCGGAGTGGTATTAGCCGCTACCACTCCGATCAGGGTCTGAACCAGCCTCCGAGGCAGACGGACCAGGCCGAACTCCAGCGGCTCAGGGAGCAAAGAGTCGCTGCCCAAATCAAGAACATGGAAGACTTCCTCAAGATGAATGGACTGGCGCTGGAGGAATGCGTATCGTACCAGACGGGCATGAAGTACAGAAACCTGGGGAAGTCTGGCCTGAGAGTCTCATGTCTTGGATTAGGAACTTGGGTGACGTTTGGAGGACAGATCACGGATGAGATGGCAGAGCAGCTGATGACTCTGGCGTACGAGAACGGGATCAATCTGTTCGACACGGCAGAGGTCTACGCTGCAGGAAAGGCGGAGGTGGTGCTGGGCAACGTCATAAAGAAGAAAGGATGGAGACGCTCCAGTTTAGTCATCACAACCAAAATATTTTGGGGTGGAAAAGCAGAGACGGAGAGAGGATTGTCAAGAAAACACATTATAGAAGGTTTAAAGGCGTCGTTGGAGAGATTGCAGTTAGAATATGTGGACGTAGTGTTTGCAAACAGACCTGACCCCAACACACCCATGGAAGAAACGGTGCGGGCGATGACCCATGTGATCAATCAGGGAATGGCGATGTACTGGGGAACGTCACGCTGGAGTCCGATGGAAATCATGGAAGCATATTCAGTGGCCCGACAGTTCAACCAGATCCCACCAATCTGTGAGCAGTCGGAGTATCACATGTTCCAGAGAGAGAAAGTGGAGGTGCAGCTCCCTGAGCTCTTCCATAAGATCGGTGTGGGTGCGATGACATGGTCCCCGCTGGCCTGTGGGATAATCTCAGGGAAATATGACAGCGGGGTGCCGCCGTACTCACGTGCCTCACTAAAGGGCTACCAGTGGTTGAAGGACAAGATCTTGAGCGAGGAGGGCCGACGCCAGCAGGCGAAGCTGAAAGAGCTGCAGGCAATCGCTGAGCGGCTGGGCTGCACACTGCCACAGCTAGCCATCGCGTGGTGCCTGAGGAATGAAGGTGTGAGCTCTGTGCTGCTCGGAGCCTCCAACACGGACCAGCTGATGGAGAATATTGGAGCAATACAGGTTCTTCCAAAGTTATCGTCCTCCATCGTGCACGAGGTGGACAGTATCCTGGGCAACAAACCCTACAGTAAAAAGGACTACCGCTCCTAGTGTGTATCCGGACGGGACCGGACGCTCCGCACACACCTTTGCCTGATCCTCCGTTCGCTTCAGCTTTTACTGAATGAGTTCCGGCAGCATGAGACGGGCAAGCACCCACAAACCCCGGAGAGCAAGACTTTTACAACACCAAGGGCaagaaacacacaaaaacaaactttcAAAAAAGACACATTCACTGACCGAGGCGGTGGAAAATGCAAAGGCATCGAAGATACGGATTGATCTGCAGATAAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140515-2 Predicted to enable oxidoreductase activity and voltage-gated potassium channel activity. Predicted to act upstream of or within potassium ion transport; regulation of ion transmembrane transport; and transmembrane transport. Predicted to be located in several cellular components, including axon; cytoskeleton; and synapse. Predicted to be integral component of membrane. Orthologous to human KCNAB2 (potassium voltage-gated channel subfamily A regulatory beta subunit 2).

Ensembl:

ensembl_id ENSDART00000127292

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008422 lncRNA upstream 87051 41459848 ~ 41473741 (+) True XLOC_003679
TCONS_00007142 lncRNA upstream 325702 41223485 ~ 41235090 (+) True XLOC_003677
TCONS_00007140 lncRNA upstream 359520 41192329 ~ 41201272 (+) False XLOC_003676
TCONS_00007141 lncRNA upstream 359520 41195394 ~ 41201272 (+) True XLOC_003676
TCONS_00008421 lncRNA upstream 611687 40948495 ~ 40949105 (+) True XLOC_003671
TCONS_00008683 lncRNA downstream 233196 41933100 ~ 41934619 (+) True XLOC_003684
TCONS_00008423 lncRNA downstream 314099 42014003 ~ 42017313 (+) False XLOC_003687
TCONS_00008424 lncRNA downstream 314124 42014028 ~ 42018127 (+) True XLOC_003687
TCONS_00008684 lncRNA downstream 335883 42035787 ~ 42036989 (+) True XLOC_003688
TCONS_00008685 lncRNA downstream 342655 42042559 ~ 42069664 (+) False XLOC_003689
TCONS_00007148 mRNA upstream 84797 41459408 ~ 41475995 (+) False XLOC_003679
TCONS_00007146 mRNA upstream 196346 41243094 ~ 41364446 (+) False XLOC_003678
TCONS_00007145 mRNA upstream 252050 41243094 ~ 41308742 (+) False XLOC_003678
TCONS_00007144 mRNA upstream 274702 41243094 ~ 41286090 (+) False XLOC_003678
TCONS_00007152 mRNA downstream 138132 41838036 ~ 41850086 (+) True XLOC_003682
TCONS_00007153 mRNA downstream 158903 41858807 ~ 41929506 (+) True XLOC_003683
TCONS_00007154 mRNA downstream 236531 41936435 ~ 41960276 (+) True XLOC_003685
TCONS_00007155 mRNA downstream 282055 41981959 ~ 41984487 (+) True XLOC_003686
TCONS_00007157 mRNA downstream 722467 42422371 ~ 42459902 (+) False XLOC_003694
TCONS_00007149 other upstream 95556 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 402864 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other upstream 402866 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007131 other upstream 671498 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007127 other upstream 904921 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007172 other downstream 925467 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007182 other downstream 1344922 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007198 other downstream 2324858 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 2624857 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 2624857 44324761 ~ 44334911 (+) False XLOC_003732

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_00220530_00241371.mRNA True 3324 mRNA 0.40 13 CI01000057 219465 ~ 242544 (+)
bowfin (Amia calva) AMCG00002130 True 6210 mRNA 0.49 15 CM030136.1 4192660 ~ 4219877 (+)