RNA id: TCONS_00008421


Basic Information

Item Value
RNA id TCONS_00008421
length 328
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id XLOC_003671
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40891681 ~ 40956123 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGTCTGAGATAGTATGATGTGAATGAGCTCCGTGATAAATGGTTAAAATATAGTCGATTGGGATAAAATGTTTGTTCATATCAGTGGATTACAATTTTTGATAATGGATTGAGTCCAATTGTGTCCTTGTTAAGCATTATCTTTCAGTATAAAAACAGAGaactgagtgtgtgtctgtgcggtGTTTATCACTGTCCTTAATAAACTGCAGGTATGTAATGGTAACAAAATAATAACTACCATACGATCCAATTTCTATGTGATGATAGACTGAAataaatttctttattttcaaTGCATGAGATTCTATGTAGAAATATATAAAG

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0022414 reproductive process biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:0000280 nuclear division biological_process
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008676 lncRNA upstream 16100 40891681 ~ 40932395 (+) False XLOC_003671
TCONS_00008678 lncRNA upstream 16100 40902118 ~ 40932395 (+) False XLOC_003671
TCONS_00008680 lncRNA upstream 16100 40904324 ~ 40932395 (+) False XLOC_003671
TCONS_00007132 lncRNA upstream 43295 40895694 ~ 40905200 (+) False XLOC_003671
TCONS_00007133 lncRNA upstream 48606 40897326 ~ 40899889 (+) True XLOC_003672
TCONS_00007140 lncRNA downstream 243224 41192329 ~ 41201272 (+) False XLOC_003676
TCONS_00007141 lncRNA downstream 246289 41195394 ~ 41201272 (+) True XLOC_003676
TCONS_00007142 lncRNA downstream 274380 41223485 ~ 41235090 (+) True XLOC_003677
TCONS_00008422 lncRNA downstream 510743 41459848 ~ 41473741 (+) True XLOC_003679
TCONS_00008683 lncRNA downstream 983995 41933100 ~ 41934619 (+) True XLOC_003684
TCONS_00007129 mRNA upstream 100880 40812590 ~ 40847615 (+) False XLOC_003668
TCONS_00007130 mRNA upstream 104469 40831620 ~ 40844026 (+) True XLOC_003668
TCONS_00007125 mRNA upstream 274425 40649412 ~ 40674070 (+) False XLOC_003667
TCONS_00007126 mRNA upstream 274425 40649413 ~ 40674070 (+) False XLOC_003667
TCONS_00007128 mRNA upstream 285257 40657612 ~ 40663238 (+) True XLOC_003667
TCONS_00007134 mRNA downstream 115717 41064822 ~ 41067789 (+) True XLOC_003673
TCONS_00007135 mRNA downstream 140469 41089574 ~ 41104643 (+) False XLOC_003674
TCONS_00007136 mRNA downstream 141335 41090440 ~ 41105632 (+) True XLOC_003674
TCONS_00007138 mRNA downstream 185950 41135055 ~ 41157954 (+) False XLOC_003675
TCONS_00007143 mRNA downstream 293539 41242644 ~ 41372948 (+) False XLOC_003678
TCONS_00007131 other upstream 59201 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007127 other upstream 292624 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007097 other upstream 2144757 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007094 other upstream 2359929 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007082 other upstream 3298467 37647553 ~ 37650028 (+) True XLOC_003630
TCONS_00007137 other downstream 161564 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 186504 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007149 other downstream 516002 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007172 other downstream 1676266 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007182 other downstream 2095721 43044826 ~ 43044949 (+) True XLOC_003709

Expression Profile

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