RNA id: TU48914


Basic Information

Item Value
RNA id TU48914
length 2030
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G36489
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7185179 ~ 7187208 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgttttttaactgACTGGAATCAGGGTTTAATAATAGCAGTCGCATGCTCATCAATGTTGGGTTGTTTCACCAGCAGCTACAGAAGGGATCTTTGTTAGGGGAATTGGCACATTGTTAAATATTTACTGCATATTGTATAtaagaatattttattttgagcaATATTATTGCACCTTATTTTATGGCTAGTCTATGCATTTTATGAGagcttttgtctgtttttattactATCACAGAACACAGTGGACAGCTAATGCCCAGGTTACATGTATTTGTAATGAACCTTAAAAGCAATGGAAAATCacttgctgctgcagctagtTAGCCAAAGCAGGACTTCTGCCAGAGTAGCTACAAATTACAAGtaagcattttatttttgaatatattCACACTGTCAGTGGAAATGTAAGGCAGTATGAGAAATGCAGAacaattttaactttttactaTAGTACTGTAGTTCATTGCATTAGTTTTTTGATACCTGAATAATAGTTTGAGAAGTAGTTTCTCCTGACTAATCTCTATGTTGTCAGTGATTGTTTGTCCCTGTTAACCTTGGCGGTCACTGAGTGATTTTACTGGTTAGCATGTTCTACCAAGATTgtggcttcttcttctttgacgATCAAAAGTAATATATCTAATAATGCATTCTTGCTAGACATTGTAGTATGAACTCAGAGGGCTTTGGCCTTCTTTTAAACCAACCACTAGCCTCATGTCTGTAATGATAACGTATAACTGTTTGTTGTGTGAAACCTGCAATGCAATTATTATTCAATAAAATAGCCACAGAGTTTAGAAAGGCATTTAATTTGTCAGATGCTCAATGCAACCTTATGTTAATGAatgtgtgttaaaaaaaaaagttctggcATAAgtgtagttgtttttgttttacttccAACACAACCTCCTAAATTATTGATATACATACCATTTAAACATCAAAACATTTGGTGGTTACAGTGATTTTAAGGTGTCCAGGTCATTCAGAGCTTACATGTACGTACTTTGTTTTTGAGCTAAAAGCTGCTCTACTCCATAGCTCAGTGCTATTTGCATTGCTCCCAGTCCCATAAGGTTAAGTAcctacagtgctgctcatgagtataAGAACCCATGctgaagttgactaaaaagaggaataaaaaaattatcttttcgAAATTGATcgtaatgccttaattaaaaaaattaggaaaaatccaacctttaaggacttCAATTTTcattgtgaatgaataatgtattgtaaataaataaatgttcttccttataatacagggggcataagtcagtacacccctatgttaaattcccatagaggcaggcagatttttatttttaaaggccagttatttcattgatccaggatactatgcatcctgataaagttcccttggcctttggaattaaaatagccccacatcatcacatacaccatacctagagattggcattgttttatttcagttagcctaatagctggtttgatttgcagtgagagatgattttatggaaagtaccccatgccaatctcttttcttttttttcccctaattttttcaattaaggcattaagatcaatttccaaaagatgatttttttattcctctttttagtcaactttagcatgggttcctatactcatgagcagcactgtatggTCAGCTGTTTCCATTCATACTTAATCACTCTCCATGATATTAACCATGTCTTACCATGACATATTTGAGTGCTAACATTGACATTGTTAACCATAAACAGGTAGAATTTGTGTCTTGCCCATAGActgttacagtctatggtcttgCCCCTATAAGTTGGCTTTTGGAAGattttaacaaataaatgatTCCCATTGGTTTATGTCTGGATGTGGTTATTTGCTGACAGTCAGCATTAGTGGTAAAGCATTTGAGAGAATTCCAGAGCGAGGTCCAGGCACTCTGTAGCCTGAAGGCAGATGTCGCAGGCAGGACAGTCGCACAGGAAGCAGCGAACACCCAGACACCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48804 lncRNA downstream 36488 7147991 ~ 7148691 (-) False mbd1b
TU48802 lncRNA downstream 38128 7146074 ~ 7147051 (-) True G36425
TU48800 lncRNA downstream 55854 7128713 ~ 7129325 (-) True G36423
TU48791 lncRNA downstream 63140 7121607 ~ 7122039 (-) True G36414
TU48752 lncRNA downstream 170634 7014311 ~ 7014545 (-) True G36380
TU48925 lncRNA upstream 85260 7272468 ~ 7272716 (-) True G36499
TU48927 lncRNA upstream 93610 7280818 ~ 7281850 (-) True G36501
TU48952 lncRNA upstream 125216 7312424 ~ 7317087 (-) True G36513
TU48955 lncRNA upstream 146858 7334066 ~ 7334361 (-) False si:dkeyp-97e7.9
TU48956 lncRNA upstream 148286 7335494 ~ 7337272 (-) True G36517
XM_039798721.1 mRNA downstream 6166 7163701 ~ 7179013 (-) False cxxc1b
XM_039798720.1 mRNA downstream 6166 7163701 ~ 7179013 (-) True cxxc1b
XM_039799173.1 mRNA downstream 23181 7148613 ~ 7161998 (-) True mbd1b
XM_039797114.1 mRNA downstream 41535 7129351 ~ 7143644 (-) False ccdc120b
XM_039797113.1 mRNA downstream 41535 7129351 ~ 7143644 (-) True ccdc120b
XM_039797960.1 mRNA upstream 469 7187677 ~ 7196736 (-) False tfe3b
XM_039797959.1 mRNA upstream 469 7187677 ~ 7196735 (-) True tfe3b
XM_039797958.1 mRNA upstream 9939 7197147 ~ 7205305 (-) True gnl3l
XM_039797488.1 mRNA upstream 22880 7210088 ~ 7211900 (-) True LOC120557297
XM_039797489.1 mRNA upstream 38288 7225496 ~ 7227311 (-) True LOC120557298
TU48334 other downstream 2272762 4906430 ~ 4912417 (-) True ghrh
TU48231 other downstream 2580694 4604133 ~ 4604485 (-) False LOC120556780
XR_005639069.1 other downstream 2762801 4406456 ~ 4422378 (-) False apobec2a
unassigned_transcript_178 other downstream 3903153 3281955 ~ 3282026 (-) True trnae-cuc_1
TU47713 other downstream 4232072 2887992 ~ 2953107 (-) True G35647
unassigned_transcript_181 other upstream 1192544 8379752 ~ 8379824 (-) True trnaf-gaa
unassigned_transcript_182 other upstream 1196075 8383283 ~ 8383355 (-) True trnaf-gaa_1
TU49387 other upstream 1225518 8412726 ~ 8414933 (-) True LOC120557774
TU49462 other upstream 1431886 8619094 ~ 8622685 (-) False mustn1b
unassigned_transcript_184 other upstream 1445605 8632813 ~ 8632885 (-) True trnar-acg_9

Expression Profile