RNA id: XM_039798192.1


Basic Information

Item Value
RNA id XM_039798192.1
length 5514
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC120557654
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24999449 ~ 25021491 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTACAAAGCGTAAAATCCAGGCTCATCATATTTGCGCTCTCGTGTTTCGTCAGTGATGCACTATCCCGTGCCTCCCCCCCATACGAGGCATGTCTTCTCCACACCACACCACTCCTGCTTCCTCACATGAATGTACCGCGCCGTCGTCTCTTCCCAGTTGAGCAAGCTACTTCACCGTAGTTGGTGTTCGTCCAGCCCACCGCAGCTGTGCCCTCTGCTCCCAAAGGCAGTCCCCGTCATGACCTCCCCTTTCTGCGATTTTGCCGATATTCGCTAAATGGGATTCGTGGCTGGTCCGAGGTTTCCACAGCAACTGGCCATCCGCTTCCATTATTTGTCTAATGAGGACAGCCATAAGGATTTAACACGGTTCCTCGCTGCGCGTCTCTGATTTTTGGGCTGAATCTCTAGACGCGTTAAAGGTCTGCACATGGGGGCGGGCAAGAGCAAGCCCAAGGAGCCAGGCCAGCGCTCCATGAGCCTGGACGGCACCATCGGCACAGGCTCAGACAGCGGCCACTTCCACCACCTGGGACCTGCCCAGCAGACCCAAACCCCCAACAGGAGCCCTGCCGTTGGGACAGGCAGGCGGGGGCATACAGGGCAACACCAGCTCGCCCCCACAAACACTCCTGAGCTGGCTCTCTTCGGAGGGGTGGACCATACAGGCACCATCACCTCGCCTCAAAGAGGACCTCTCTCAGGAGGTGTCACTACATTTGTGGCGCTGTATGACTATGAGTCACGGACAGCGTCTGATCTGACCTTTAGGAAAGGCGACAGGCTGCAAATTGTCAACAACACAGAAGGGGACTGGTGGCTCGCTCGCTCCCTGACGACAGGAGAGAGCGGTTATATCCCCAGCAACTATGTGGCTCCATCCGACTCCATCCAAGCAGAAGAGTGGTATTTTGGGAAGATCACTCGGCGCGACTCCGAGAGGCACCTTTTGAACTTGCAGAACAGACGAGGAACCTTCTTGGTGAGGGAGAGCGAGACCACTAAAGGAGCTTATTGCCTGTCAGTGCTGGATTATGATAACACCAAAGGCCTGAATGTTAAACATTACAAGATCAGGAAGCTGGATAGCGGCGGTTTCTACATCACATCCCGCACCCAGTTCACGAGCCTACAGCAGCTAGTCTTCCACTACCGCAAGCACTCTGATGGTCTGTGCCACGCTCTATCAGACGTGTGTCCTGTGTCCAAACCTCAGACCCAGGGACTGGCCAGGGACGCCTGGGAGATTCCCAGAGAGTCCCTTCGCCTCGACCTTAAACTGGGACAGGGCTGCTTTGGAGAGGTCTGGATGGGCACATGGAATGGTACAACACGTGTAGCCATTAAGACCCTGAAGCCTGGCACCATGTCTCCAGAGGCCTTTCTTCAGGAAGCACAGGTCATGAAGAAGTTGAGGCATGAGAAGCTGGTCCAGCTGTATGCTGTTGTGTCTGAGGAGCCTATCTACATTGTGACAGAATATATGAGCCAAGGCAGCTTACTGGACTTCCTTAAAGGGGAAGCAGGAAAGATGCTTCGTCTGCCTCAACTAGTAGACATGTCCTCTCAGATTGCAGCAGGCATGGCCTACGTGGAGAGGATGAACTACGTCCACAGAGACCTGCGCGCTGCCAACATCCTGGTGGGAGACAACCTGGTGTGTAAAGTGGCTGACTTTGGCCTGGCAAGACTCATTGAAGACAACGAGTACACTGCCAGACAGGGAGCTAAATTCCCAATCAAATGGACGGCACCAGAGGCAGCTCTGTACGGTCGTTTCACCATCAAGTCAGATGTCTGGTCCTTCGGTGTGCTGCTCACAGAACTGGCAACTAAAGGCAGAGTCCCCTATCCAGGTATGGTTAACCGCGAGGTGCTGGACCAAGTGGAGCGCGGCTACAGGATGCCCTGCCCGGCAGAGTGCCCCAGCTCTTTGCACGAGCTCATGCTCTCCTGCTGGAGGAAGGACCCAGAAGAGAGGCCTACATTTGAGTACCTGCAGGGCTTCCTAGAGGACTACTTCACCTCCACAGAACCCCAGTATCAGCCAGGGGAGAACCTATAGAACCACATACACTGAACCGAATCCGGGGGGAGAACCTCAACACAGAACGATCTGCACTAACCGACCTCAGAGGAGCACCTGTGGGAGGATCTGAGCCTGTGAAACTCATCAGGGAGGAACTTGAGATTCTTCTGTGGAAACAAAACCGAGATAGAAACCTGCAGACGTCCCATCATGTGCCATAAAGAAACTGCTACAGAAGAACCTGAAGAACCTCTTTTGTGCAAGCGCTCACTGTTTACTGAAGGTTTGCTTGCAGAAGTGAGGTTAAAGGCTGTAAAAGAGAACTCCTGGTGGACAGACTCTGCATCTGAATTGAGGTTTTCTGAGAGGTGCGACTGATGTGGGTGGAACGGAATCAGGATCTACATACAGAGCAAAGGGGTTAATGAAAAAACCTCCCCTAAAAGAGAGAAGGTCAAGGGAGGTTATTTCGGGCATGAGCTGTTTAGCAAAacctccctctttccctcttcTGTTGTGTCTCTTTACCCTCGCCTGGTACCTTCCTTTTCCGTCCACAGAAGAGCACTGCCACTGTGGCTCAGGTGCCAAAGGAAAGTCTGTCTCTCTTAACGTCCTTTATCTCCCTTCTGCCTCtgtcttctctttctctatttCTGTCTGACTTGCGGTATCTCTCTCCAGTTTTCTCAAGTGCTGCTTCTTCAAAGTGTCTCCAAATAACTCAGCTCTGGAACTCTACATTGcatctttatttatgtttacCTTGACAATATGCATTTTTTGGTTTAAGGTTTTGTTCCAGTGGCAGACAAAAAAGTTCCTGATTTCTCTTAATGTTTTTTCTGATTATAAATAGGCAAGGTTGTTAGAACCACTATCATGGAAGTGCCAACAGACAGGTTttgtaaaggccctgacacaccaacccgattatcggccgtcggacagtctggtgagttcagtgactcgagtctgttcggtgtgtggCCGATTTAACTTGTTGAATCagaaggcgggcagtcggactcaatgaccaatctgaatGGTGGAgggctaacccggaaatgacgagtggGATGAGCgggactagagtctctcaaaatctcacgaaaatcttttaaactgacctttgtcgatctgaaatgaagacagattcagcaactgcatggcctatatatcttgcttaaaatgttttcagaaacacgtttctgtgaattattttcgtaaaatacgagaacGTATTCCGAATGAGCTGCCATTATGGTCTGACTTTGAAATTCCGGAGAAggcagacccacgtgacgcgtttgtcGAATCAGCTGCCGGTTAAAATTCTTTGgccaacaatacagattagtgccgcctgctgttatggagacctattacgtctcgcgcacgcacAGAATGTATGCTCAAGTCGGCgttgcttcggtgtgttccgaagcactttttttttccaccaactcggggaggcagtcagtccgactgccttttctgccgaaggtcggccgtcagattggtgtgtcagagccttaacaCTGAAAATTGGGTCAATTGAATTAAAATGTGAGGCCTTTCTCTCTTGTCTAACCCTCCTTCTCTTTTCTAGCTGTATTTCTTGACATACGCTGAATGGCCACAGCGGCCAGCTGGATCCAACCTCGACTATTAAAAATGACTTTGATGCAGGTAGTGTTTGAATGCTTGTTGTTTTAAATTACCTTGATTTAACTGGAAAGTTGCATTAAAAATAATCAGCACTGTTATGGTGGCAGTAAAAAGCAGTTTTAATAGTAGTCAGCTCATTTCCTCAGAGGCATAAATGGGGTAACTTTCATTAAACATTCATCTGACCTACTAAGAGGCTCATGGCTACCAAACCAATCATATGTTCAATCACTGTTTATATTCAACTCCGCTCAAGATGAGAAAACCCTGAGTGCAAAAGCCTACGTTGTTGTGGGCCAAACAAATCACATTTCGTTACTGCTGTCCATGtatataatgttttattatcAAGGGGCTTACTTGGGGGTTTTTAGTTCTTAAACTTTCGATAAAAACCTGCTCCATTTCCCCAGTAAACGCCATGTTGGTGAGTAAACTGGACCGATAAACCTGGTACTGTTTGCTGAAGGATTCAAAAACACTTAACAGCTGTGTCCATAGAAATATGCAACCAGGCGGCCCTCATGAAGCTGTTAAACTCTGATCAGGTAACTCTAATAAAACTGTGTTTATAACTTACTATAAGAGTTGATTTTAAAACCAGTTAGCATGCTTTTGTGCAGTTCTTCTCTTGATCATTGGCTGGGTTTGTATTTATGCTGTACTGTACATCAACATgtgtatttttactttattcaaGGTTCAGGTGAGGCGAGGGGATCATCCTATAAACAGACTTCTGAACATTTGTGCCATTAacctacttttttaatttatcttACCCACTGCTGCCAGTTCTCACTGTCATATTGTACATACTGTAGCTCTTTAGGATTGGTTTTGTATCATGTAAGCCACTTTCAAATGGCAGGTATTTATGTTGGGTGTCACCCATTTCACAGTGGTTTAGTTTATGACGTAGTCCATGCAGCAATAGTAGATTTAAAGCTATAGATTGTTGCCAAAAAATACTATGAAACTAGTTATCAAAATATGAGCCATGCAGCAATAAGAAATGGCCCATTCCCTCTAAAACCATGAAATTATTATCCGGCGATAAGGAATCCCGATGGCTAATTTAATCAATAATGTGGATGATTCTGAAACCACAATGAAATTGGAGTTTGTGTTgtgatttgaaatgaaaatgtggGCAAAGATGTAAATAGTATCTTAAACAAATGACTTTGACTatcatgtaattttttttttgtatagtaatttgttttactttaaatGCACCTCCATGTAGAGGTTTTTACACACGCACACCTGCTcccaaaatgttttaatatcaaGATGCTACTGTAAATGGGGCTTAaggaatgttttatttttttattattggactttttttctgaaaaagaCTATTTAAAATTGGGCTTGACATAAAGTATATATTTCCAAGAACATGTATCAGTGCTTTCCTCTTTAAGAATTGGAAATCCCCTGTTAGTTGTAAAGCACTGAAACGCCTGTAAGTTACTGGGACAATGTGGAAGTTGATGGGCTCATGACAAGTATGAGTAATGCCAATGTCTGATTGGATTTTCTGTGCCATATTAAAGAAgtgtcctgtttttcttttttacatgttttttttatgaatctATGCAGCTTCAGTCTGGCATTCCTACAACTTCATGGCCATTTTGTTCTAAAGTCAAAAACAATGATCATAAACAGAAGGTGTGAGCATTTTGTAaggactttttttgtttgtttcttatgTTACAGGATTGCAATGGGTATCGTGCCACTTTATGTTGATCTTTAAATGTGCAATAAATtatatttcaaatgtgttttgataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55827 lncRNA downstream 52705 24942816 ~ 24946744 (-) False G41514
TU55826 lncRNA downstream 52705 24943944 ~ 24946744 (-) True G41514
TU55823 lncRNA downstream 66621 24923881 ~ 24932828 (-) True G41511
XR_005638893.1 lncRNA downstream 90410 24904060 ~ 24909039 (-) True LOC120556809
TU55883 lncRNA upstream 63928 25085419 ~ 25086033 (-) True G41557
TU55924 lncRNA upstream 272473 25293964 ~ 25294254 (-) True G41593
TU55940 lncRNA upstream 289273 25310764 ~ 25357934 (-) False ncoa5
TU55943 lncRNA upstream 304016 25325507 ~ 25325968 (-) True G41604
TU55971 lncRNA upstream 603729 25625220 ~ 25625446 (-) True G41632
XM_039798966.1 mRNA downstream 29939 24956086 ~ 24969510 (-) True LOC120558100
XM_039796535.1 mRNA downstream 95892 24892307 ~ 24903557 (-) True LOC120556807
XM_039796534.1 mRNA downstream 111223 24886070 ~ 24888226 (-) True LOC120556806
XM_039798202.1 mRNA downstream 392055 24604756 ~ 24607394 (-) True LOC120557657
XM_039798248.1 mRNA downstream 407752 24587612 ~ 24591697 (-) True LOC120557704
XM_039798330.1 mRNA upstream 945 25022436 ~ 25025061 (-) True manbal
XM_039798331.1 mRNA upstream 4890 25026381 ~ 25036849 (-) True LOC120557743
XM_039798332.1 mRNA upstream 19588 25041079 ~ 25048074 (-) True LOC120557744
XM_039796433.1 mRNA upstream 60797 25082288 ~ 25086976 (-) False LOC120556727
XM_039796432.1 mRNA upstream 60797 25082288 ~ 25086766 (-) False LOC120556727
TU55398 other downstream 1845713 23151085 ~ 23153736 (-) True G41167
TU54925 other downstream 3228944 21765703 ~ 21770505 (-) False iars1
XR_005638952.1 other downstream 3449903 21520669 ~ 21549546 (-) False slc6a11b
XR_005638883.1 other downstream 4612399 20281574 ~ 20387050 (-) False kaznb
TU54346 other downstream 4801963 20194698 ~ 20197486 (-) False tcta
TU55835 other upstream 1359 25022850 ~ 25025031 (-) False manbal
unassigned_transcript_203 other upstream 504629 25526120 ~ 25526201 (-) True trnas-uga
TU56362 other upstream 1303426 26324917 ~ 26341192 (-) False LOC120557963
TU56437 other upstream 1791717 26813208 ~ 26894030 (-) False G41944
unassigned_transcript_204 other upstream 2552165 27573656 ~ 27573727 (-) True trnap-agg_2

Expression Profile