RNA id: XR_005638893.1


Basic Information

Item Value
RNA id XR_005638893.1
length 2355
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC120556809
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24903894 ~ 24909039 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAGTTAGCTTCCCATTCGGCAGTTAAGGGGACACTTAAGGGAAACTTAAAGATGAAGTTAGCTTCCGGTTAAGGGAACCATAACAACATTGCTGAACGACTGACTGGTCCTCCGTTTTTTGAACCTCTCTGTTGTGAGAGGGTGTTAGACATTTTAGGTTAAGTATTAAAGCTGTGTGAAACCCACTTTGGGATTTGTGAAAGCTTATTTGGAAAAATGCAATAACGGGAGATTTCACTGAGTATTTTTTACCTGTAGACCACCTTggaccaaaacgtagcaacacatttttttaaactgaaatggGAGTCcgttgaacaccctgttgtgtgCGCAAGCCCTCTGCCTGCGAATCGGAAGCTAACTTCAGCGTTAAGTTTCCCCTTAACTGCTGAATCGGAAGCTACGAATCGGAAGCTGACTTCAGCGTCGTCAAAGATTTGCCCACAGGCTGTATTTACGCCCAGTTATGTCGAGTTTGTGCCCAATCTGAGAAACGGTTATCGGTTTGGTTTGTTTAAAAAGTTGATCGACCGGTGTATCCTAGCATCAGGAAGTACCTCCAGGAAGTAGTTTGCTGTCTtgtttgagtgacagctgtGCGGTGGTGACAGCCCACACGGGACGGCAGCCCGCTGAGCCGAGCCGATACTCAAGATGGCAGGTCTATCTTTATACTTTGAAGATGGCCATGATGATCTGGATGATTTTGGATTTGATGACTATGGTTCAGAGTGCGACGGAATCCGCATCACAGCCTTCCTCGATGCAGGACAAGACAACCTAACTCCTCTTGGGAGGCTAGAGAAgtatgccttcagtgagaatgtCTTCAACAGGTAAGTGAAGTCCCGTGGTCAGGCTGTCAACACtctgaaaaacagacaaaaggctAAATATCAGACAGACAATGGGATGGTCATCAGTATTTTTTCAGGGTGTGAGGATGCATTGTCAAATTATATAGTGGTATGTGaacacacagggatgcatattgtagtgcagaaaatatagatttcttttttttttacctgccaAGAAGTCGACTAGAACTCTTGATTACTCTTCATTTTCGTTCTTCACTGTTTGTAGCTTGCTTTAAGAGATAAAATGATGCATAACTTAATGCTGCTGCAACTGAGATTGACAGTAAAGGAATCTACAGAGCTTATAATattgatacattttatttaaatagcgCTTTTCACAATACTTATTTACAGAGTTAAAACACACTAAAAATAGGGGCACCTATGGAGAAGGTGCTTGTCTGCTTAGATTGTAGAAATCACAAATGTGCAGTTGCACATTACAAAAAACAATTAGCCAGAATCATGCTGTAATCCATACATACGCTGTTTCCTTTCTGACCGTGTGCCACACTAATATTAGTACATTTGAAATTAATCCTTTTTTCTAGCATCTACACTAAgcccactttattttttttgtatatgcaAAAAATGCTAACAGAAAAATTAATACAATTTTCGATTGGTATTTTTGGTGTTGAAGTTTCAGAAAAATGTATTGATGTATAAACCACGATTTCAAATGTATCTGCAGTTGTGTGGACATGTCCTAATGTGGACAATTTGTGTTGAGAGCATAACCATAGTGGGGTTAGCAACAAGGAAACATCAGACTGCAACCTAGTGGAACTATCAAGGAAATGTGGCCAATTTCACTTCTTAGAAGTGATGTGAAGATGTAGCCAGATATTCAAATGAACCTTTCATCTAATTTTATAAACCTTATCTACCAGGAAACTTATGTTTTAAAACAGCGATAATATAGATTTTGCACCAAATTGGGTGTATTTTTGGCtctgttgttgtattttatgCTGTGTAAACAAGAATTTGTATTATTTGCACTGTTGAAAGAAAGTTAGATTGATTGTTAGATCATTCACTTAATGTTCAGTGATTGCAAGTAAATCATTGCTGAAAGGTTTTTGTGGCTCAAATAAGTAATAGCATAATGTTGCACAATAATATCTTGTTAATTGATGTTCTTTACTTCATTGTATCATAAACCCCGCATTGGAAAATTTAAATGTGATAGACATATCATCCACCTCAAGTAATCTCCAGATGTTTGTTTGTCATCTAGACGACTGTCTGCATTCCTGTGTATTTACTAATTGTATACCTGCCTTAACTCTGTAGTGCAGGAGTGCCAAAGACTTAAAGTAAAGCCATGGGTGAATGGTGTCTGTCTGAATGGATATGGCAATAAGTTGATAATAGTAGCCCAATGTCATGAATGATGACTCATTATGATTCATACAAACCCTAATTacaatgaagttgggacgttgtgtaaaatgtaattacaaacagaaaacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55810 lncRNA downstream 11811 24891042 ~ 24892249 (-) True G41503
TU55811 lncRNA downstream 11811 24891108 ~ 24892249 (-) False G41503
TU55809 lncRNA downstream 11811 24891148 ~ 24892249 (-) False G41503
TU55803 lncRNA downstream 15858 24886073 ~ 24888202 (-) False LOC120556806
TU55800 lncRNA downstream 24138 24875849 ~ 24879922 (-) True G41498
TU55823 lncRNA upstream 14842 24923881 ~ 24932828 (-) True G41511
TU55827 lncRNA upstream 33777 24942816 ~ 24946744 (-) False G41514
TU55826 lncRNA upstream 34905 24943944 ~ 24946744 (-) True G41514
TU55883 lncRNA upstream 176380 25085419 ~ 25086033 (-) True G41557
TU55924 lncRNA upstream 384925 25293964 ~ 25294254 (-) True G41593
XM_039796535.1 mRNA downstream 503 24892307 ~ 24903557 (-) True LOC120556807
XM_039796534.1 mRNA downstream 15834 24886070 ~ 24888226 (-) True LOC120556806
XM_039798202.1 mRNA downstream 296666 24604756 ~ 24607394 (-) True LOC120557657
XM_039798248.1 mRNA downstream 312363 24587612 ~ 24591697 (-) True LOC120557704
XM_039796933.1 mRNA downstream 350177 24535430 ~ 24553883 (-) True itcha
XM_039798966.1 mRNA upstream 47047 24956086 ~ 24969510 (-) True LOC120558100
XM_039798192.1 mRNA upstream 90410 24999449 ~ 25021491 (-) False LOC120557654
XM_039798191.1 mRNA upstream 90410 24999449 ~ 25021491 (-) True LOC120557654
XM_039798330.1 mRNA upstream 113397 25022436 ~ 25025061 (-) True manbal
XM_039798331.1 mRNA upstream 117342 25026381 ~ 25036849 (-) True LOC120557743
TU55398 other downstream 1750324 23151085 ~ 23153736 (-) True G41167
TU54925 other downstream 3133555 21765703 ~ 21770505 (-) False iars1
XR_005638952.1 other downstream 3354514 21520669 ~ 21549546 (-) False slc6a11b
XR_005638883.1 other downstream 4517010 20281574 ~ 20387050 (-) False kaznb
TU54346 other downstream 4706574 20194698 ~ 20197486 (-) False tcta
TU55835 other upstream 113811 25022850 ~ 25025031 (-) False manbal
unassigned_transcript_203 other upstream 617081 25526120 ~ 25526201 (-) True trnas-uga
TU56362 other upstream 1415878 26324917 ~ 26341192 (-) False LOC120557963
TU56437 other upstream 1904169 26813208 ~ 26894030 (-) False G41944
unassigned_transcript_204 other upstream 2664617 27573656 ~ 27573727 (-) True trnap-agg_2

Expression Profile