RNA id: TU55800


Basic Information

Item Value
RNA id TU55800
length 1837
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G41498
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24875849 ~ 24879922 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAGTGcactgcattacagtagagtggtTATTTCAATACAATCTATCTATTCAATCAACACAGTTTTGTGAGTCCCCACTGTGTCTGACTGACCTCTAGCAGGAAGTCAGAGGCATCGTGTACACACATTACGAGGCTCCCTACTCGCGTCATGTTGTTGACGTAAGAAAAGCTGATCAGGCCAACTGTCGCCAGGTGATGGATGAACATGATCTTGAAGTCCTTTTAATGTCAGTGAATTGGGAGAACATGAGTGACCAGTAGAAGGCCAGTTCTGTCACATAGTAGCGGTAAAGACCCGGAGTCATGACctgaagagacagagaggtgaGTTAGTTCAAATAAGAattgtattcatttttaaaatgtttctttgAACACAAACTATACTGGATATCACACAGTATTAAGAGTGAAAGAATAAAGTGTGTGACCACCACTATGCTCATCACAAAACACCTCCTAGCCCAATAAATCATCATGATAATAAAGCATGAGAAGTCCTGCTGTCCAGTGAATTGTGTCATTGTCTAACAACTGTGTCTTAAATCGGGCTCAATCTACATGATAATAAAGACAGTATATTAACTTGTCAGACTGCTTTTTATGAAACATCAGTTATACAAGGAACAGGAAAAAAGACAGTGAAGTAAAACGGATACTGACAATGCTTCTGCTTTCACGCTCTGTGCCGTTTCCTTAAGTGTAAAGTGGCAGAGGAAAAAAGTCAACAACTGTGGACTGCATAACTGTGCGCCAGTTTATTACGTACAAAGTCATGCAGTCCAATACAATAGCCCTGCAATAAAAGTTTAGTTCTTGACTTTGTTGGTTTAACTAATTTCCGAGGCTGTAGTTGTAGTATTGGATTGCATTAATAGATTATATAGACAAAGATTAGAACTGCATCATACCTGATAGGGATAACCGTACCAGCAATGCCGTGTATCCCACATCCAAGGATACTAAAAACAAATGCATATTAGTTCAGCGCACAATCCATGAGGCTATTATCTTTGGAAATATACCCAGCCAATCAAATATTTTCAATGAAAGAACAAACAATTCTAACAGCTAATTTCTCTTCCCCCCCCTGTTTATAAGTGCTTCCAAGCTTGATCTGATGGTGTGCTCACCTGCCACAGAAACCGGAACCCATAGGTaaaaatgcacaaataaaatgtaaacctccACCTACAAGTAAACGAGAAGGAATTATGATCCCGAAAATAGGgctggtttaaaaaagaaacagcaCATTAAGAATAAAACACATGGTATGCATCTACTTGCCCCTTCCCTAACCATTAGCAATACATGTCTCCCCACAATCCTTACTCTAACATAACATGattcttattttaaatattaatccAAATCCTAACAACACTTCCAACACACAACTTCCAACAGGCCTCGAAGAAGCCAGAACCAGCCAAAATGTTCTCACTCTTAGATAGCAATGCAggaatatacacacataaatacacacacctgCGCAGAAAACACAACCACTGTGTGCTCAAGCATGCAGAGAGGTTAAAGGGGAACACAATAGGGATTAACCTACATGCTCTCACAGAACTTAGTGTGTGTACTGGGTTTATCTTGGTTCCTGCGGTGTCTGAACCAACGCTGGACCTTTCGCACCTCCCAGTCCAGCTGCTTGGATAGGCCATCCAGATGGCGAGAGTCTGGATTCTGTGTGAAGAGAAAAGAATTAAAGTGCCCAACAAGGATTAAAGGAAATATTGGTTATTATACAGTATCCAGTCCAAGACTTGAGACTCTCAAAATAACTAACTCAATGGGAGCatgtgtagtctatatccacga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55785 lncRNA downstream 17392 24841053 ~ 24858457 (-) True G41485
TU55773 lncRNA downstream 48673 24826469 ~ 24827176 (-) True G41474
XR_005638990.1 lncRNA downstream 250824 24610223 ~ 24625025 (-) True LOC120557658
TU55699 lncRNA downstream 292568 24579751 ~ 24583281 (-) True G41406
TU55691 lncRNA downstream 310091 24563763 ~ 24565758 (-) True G41398
TU55803 lncRNA upstream 6151 24886073 ~ 24888202 (-) False LOC120556806
TU55810 lncRNA upstream 11120 24891042 ~ 24892249 (-) True G41503
TU55811 lncRNA upstream 11186 24891108 ~ 24892249 (-) False G41503
TU55809 lncRNA upstream 11226 24891148 ~ 24892249 (-) False G41503
TU55812 lncRNA upstream 23972 24903894 ~ 24904101 (-) False LOC120556809
XM_039798202.1 mRNA downstream 268455 24604756 ~ 24607394 (-) True LOC120557657
XM_039798248.1 mRNA downstream 284152 24587612 ~ 24591697 (-) True LOC120557704
XM_039796933.1 mRNA downstream 321966 24535430 ~ 24553883 (-) True itcha
XM_039796932.1 mRNA downstream 342699 24531472 ~ 24533150 (-) True pxmp4
XM_039796928.1 mRNA downstream 347825 24521920 ~ 24528024 (-) False tgm5l
XM_039796534.1 mRNA upstream 6148 24886070 ~ 24888226 (-) True LOC120556806
XM_039796535.1 mRNA upstream 12385 24892307 ~ 24903557 (-) True LOC120556807
XM_039798966.1 mRNA upstream 76164 24956086 ~ 24969510 (-) True LOC120558100
XM_039798192.1 mRNA upstream 119527 24999449 ~ 25021491 (-) False LOC120557654
XM_039798191.1 mRNA upstream 119527 24999449 ~ 25021491 (-) True LOC120557654
TU55398 other downstream 1722113 23151085 ~ 23153736 (-) True G41167
TU54925 other downstream 3105344 21765703 ~ 21770505 (-) False iars1
XR_005638952.1 other downstream 3326303 21520669 ~ 21549546 (-) False slc6a11b
XR_005638883.1 other downstream 4488799 20281574 ~ 20387050 (-) False kaznb
TU54346 other downstream 4678363 20194698 ~ 20197486 (-) False tcta
TU55835 other upstream 142928 25022850 ~ 25025031 (-) False manbal
unassigned_transcript_203 other upstream 646198 25526120 ~ 25526201 (-) True trnas-uga
TU56362 other upstream 1444995 26324917 ~ 26341192 (-) False LOC120557963
TU56437 other upstream 1933286 26813208 ~ 26894030 (-) False G41944
unassigned_transcript_204 other upstream 2693734 27573656 ~ 27573727 (-) True trnap-agg_2

Expression Profile