RNA id: XM_039796928.1


Basic Information

Item Value
RNA id XM_039796928.1
length 2118
RNA type mRNA
GC content 0.51
exon number 14
gene id tgm5l
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24521538 ~ 24528024 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGTGTATATAGCGGTAGAGCCTGACAGCAGGGACATACAGCATTGCATTGAGAAAGAGACACTAACAAATGGAAGAcatgaaaatacaaaatgtcAACCTGGAAAAATCTGAAAACCAGGagagacacaggacacagggcTTCAGCAGCTCCAAAGCCCTGGTGGTGCGAAGAGGAGCCCCATTTAGAGTCAGTCTACAACTGAAGGGCCAAGCCTTTAACCCCAAGACTGACTCTGTGAGCATCAAAGTTACACTAGgCCGCCTATATATGGTAATGCCAGTCACATTCTCCAAGAACGTTCCTTCCTCCCAATGGAAAGCCTATATGGACCCAGAGGGCCTGAACCTCCAGAACCCCTCCATATTCATCTCCTCTCCTGCCTCCGCCTCCGTGGGCTGCTATGGatttcagctgtgtgtgttgacTCAGGGCAGCCAAAAGACCTGTGCGTTTGGCAAATTCATCCTGCTCTGCAATCCCTGGTGTCATGAGGATGTTGTGTATATTCCTTTTGAGGACCAGCGACAAGAGTACATCCAGAACGACTCTGGGCTGCTGTTTATAGGGACAGCTATGAACATTGTGTCAAGACCATGGTCTTTTGATCAGTTTGAGCCTGGTATTCTGGAGGCGTGCCTGGATCTGCTCCAAGTCAGCCCTCAGCACCAAAAGAACGGAAGGATGGACTACCTGAACCGAAGCAACCCTATCTACATCAGCCGGGTCGTGTCTGCCATGATCAACAGTGAAGACGACTGTGGTGTGCTGAAAGGGAAATGGACAGGTGACTTCAAACAAGGAGTTAATCCCTCCTTGTGGACTGGGAGTGGGGACATCTTGACACAGTGGGCTGCGTCTGGTTTCAGCCCAGTCCAGTTTGGACAGTGCTGGGTGTTTGCAGCTGTCATGTGCACAGTGATGAGGGTTCTTGGCATTCCCTGCCGTGTCGTCACAAACTTCAACTCTGCTCATGACACCAATGCCAACCTGGTGATTGAGGAGTACTATAGTGAAACAGGGCAGAAGCTGAACCTCAGTAAAGACACCATATGGAACTTCCATGTGTGGGTGGAGTGCTGGATGACTCGCCGGGATTTGGGATCTGGAATGGATGGCTGGCAGGTTCTGGACCCGACCCCCCAGGAAAGGAGTGGAGGAGTGTTCTGCTGTGGCCCATCACCAGTCAAAGCAATCAAAGATCGACGCATCGACCTGTTTTATGACATCCCCTTTGTCTACGCCGAGGTGAACGCCGACGTCCACTCAATCGTAGTGAGCGAGGGTCGGGTGGTCAGCTACagcaaagacacagagagagtggGATCCCTCATCTGCACCAAAGCTATTGGTTTCCCCAGACACCAGAACATCACAGGAGACTACAAATCCATCAAAAGCCCGACTTCAACACTTTCATTGAGAAGTTCCACAAGTTCAGAGGACTCGACATTAAGAAGAGGCTCAACCAAAGGGGTGTTAGTCTTCCTGACCCTGGATAATGCTCCTGTTGCTGGGGGGCCTGTCCGCTTCACAGTGAAAGTCATCAACAAGCAGAAGGTTGCCAAGAAGATGAGGTTGCATCTCAACGCCCAGGctaaaaaatacaacaacagcCCCTCAGACACCTTCTGGGAAACCCACGGTGTCTTACAACTGGCCCCCATGGAAGCTAAGGTTATTCAGCAGCAGATCCTCCCAGACCAGTATGAGTGTGTGGTGGGAGATGACCTGATAAACCTTGCAGTAGTCCTGGAGGACATGGCCAGTCAGGAGCGGGTCCTGGCCTCAGAGGAGTTCAATATTACCAGCTCACAGCTCACCATACAGATTGCAGATAAAGACTTGATTGTGAACAAAGAGCAGACTGCCACAGTGATCTTCACCAACCCATTTTCTCAGCCGGTCAGCGGAGTACTGACCGTAGCTGGGGCCGGGCTGACTCAGGGCAAGGTTCACTTCAGGATGCTCCCGCTGCGTCCAGGAGGACAAGTAGAGCAGCTCATTACCTTCATCCCCAGCAGTGTGGGAGCAAAGATGCTGCAGGCCAGCCTGTCACTCACAAACATCAACTCCACTATCAGAGGCTTCAAGATGTTCTCCGTCCTCAGAGCTTAG

Function

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55621 lncRNA downstream 183564 24337911 ~ 24338356 (-) True G41352
XR_005639050.1 lncRNA downstream 464855 24056181 ~ 24057065 (-) True LOC120558071
TU55533 lncRNA downstream 867940 23633778 ~ 23653980 (-) True G41276
TU55479 lncRNA downstream 1158094 23363048 ~ 23363826 (-) True G41228
TU55461 lncRNA downstream 1228845 23289607 ~ 23293075 (-) True G41212
TU55690 lncRNA upstream 35321 24563345 ~ 24563682 (-) True G41397
TU55691 lncRNA upstream 35739 24563763 ~ 24565758 (-) True G41398
TU55699 lncRNA upstream 51727 24579751 ~ 24583281 (-) True G41406
XR_005638990.1 lncRNA upstream 82199 24610223 ~ 24625025 (-) True LOC120557658
TU55773 lncRNA upstream 298445 24826469 ~ 24827176 (-) True G41474
XM_039798351.1 mRNA downstream 68773 24436940 ~ 24453147 (-) True rtf2
XM_039799077.1 mRNA downstream 90241 24419568 ~ 24431679 (-) False tfap2c
XM_039796932.1 mRNA upstream 3448 24531472 ~ 24533150 (-) True pxmp4
XM_039796933.1 mRNA upstream 7406 24535430 ~ 24553883 (-) True itcha
XM_039798248.1 mRNA upstream 59588 24587612 ~ 24591697 (-) True LOC120557704
XM_039798202.1 mRNA upstream 76732 24604756 ~ 24607394 (-) True LOC120557657
XM_039796534.1 mRNA upstream 358046 24886070 ~ 24888226 (-) True LOC120556806
TU55398 other downstream 1368184 23151085 ~ 23153736 (-) True G41167
TU54925 other downstream 2751415 21765703 ~ 21770505 (-) False iars1
XR_005638952.1 other downstream 2972374 21520669 ~ 21549546 (-) False slc6a11b
XR_005638883.1 other downstream 4134870 20281574 ~ 20387050 (-) False kaznb
TU54346 other downstream 4324434 20194698 ~ 20197486 (-) False tcta
TU55835 other upstream 494826 25022850 ~ 25025031 (-) False manbal
unassigned_transcript_203 other upstream 998096 25526120 ~ 25526201 (-) True trnas-uga
TU56362 other upstream 1796893 26324917 ~ 26341192 (-) False LOC120557963
TU56437 other upstream 2285184 26813208 ~ 26894030 (-) False G41944
unassigned_transcript_204 other upstream 3045632 27573656 ~ 27573727 (-) True trnap-agg_2

Expression Profile