rtf2 (rtfdc1)


Basic Information

Item Value
gene id rtf2
gene name rtfdc1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24436940 ~ 24453147 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798351.1
CTCTCGTTGTTTGTTTACAACCTGGGAACTTCCTGCTTGCTATTAGCTTTGTTCGTAGTAAGCTAACTCGGTgattagctagctacactttacAAGTCAGCTTACAAGATGGGATGTGACGGAGGCACGATTCCTAAAAGACATGAGTTGGTgaaagcccccaaaaaagtcGAGAAGGTTGATAAAAATGCAGAGTTGGCTGCCCAGTGGAAATACTGTGCCTTGAGCCAGGAGAAACTCAGACGCCCCATTGTTGCCTGTGAACTGGGAAGGCTCTTTAACAAAGATGCTATCATTGAATATCTTCTGGATAAGACTGCTGAGAGACCCAATACTCAGACTGTAGCTCACATCCGTGGGATCAAGGATATAAAGGAACTGAACTTGACTGATAACCCTgagtgggagggagagagaaggaataCTAAAGGAGACCGATATGAGGACTTCAACTGCGGCATGTTCATTTGCCCTGTTGTTGGGTTGGAGATGAATGGCAAGCACAGGTTCTGTTACCTGCAGACCTGTGGCTGCGTCTTTTCTGACAGGGCCCTGAAGGAGATCAAGACCGATATCTGCCACAAGtgtGGGGACGCCTTTAAAAATGAGGATGTCGTTGTGCTCAATGGCACTAAGGAGGAGGTTGAGAAGCTGAGGGAGAAGATGGAAGAGAGGCGGACCAAAGCCAAAACTAAgAAATCAAAGAAGAGCAAAGCAGCTGAAGCTGTGTCCACACCATCAGAATCAAAAGATGACACACAAGCTCCACAAGTGGATGTAACTGAGATCTCGCTACAAAATGGTGGTGAAAGCAGCCAGTCAGCTGTGGCCGGATCCTCCAGCTCCTCTAAAGGCACAAAGTCTTCAACTTCCTCCGCCACCAAAAGGTCCGTCCAGGAAATGACAGAGAAGTCGGAGGTCTTCAAATCCCTGTTCACCAGCCACAGCTCTGccaagcgcactaaagatcaGACATCCAACTGGGTCACCCACACCCCGTATCACTTCTAGTAACTGTCACTCAGAGCAAATAACACCATTTTTAGATTGCTCCAGAAATTGTGACCCATTAAAGACCCATTACTGATAAAACCTAGTTCTACATACCCAGCTCCAACACACATATAGACGCACACACATTGCCTACATGACCTTTAATTATGTCACCAATGTGTGGACTCCCAATACGTCTCTTCAGTCCCCTGTAGCTcagtgtttacatgttgtgaacATTTTGTTAATGGCTCCCCAAGCTGTTCAGACTCTTTGTTTTATAACCTTCCTCCCACATGTATTCCCTAGCATCTCTGTGTTCTCAGTCACAGGTGCACTGAGAGTTGATGCTCGGGTGACTTTATTATCTCTGTCACTCTGCTGTCTCCTAGTGGACACAGTGTAGCTTTTCAAAGTGATCTATACATGGTTGGAAAAGTAGTGTCAGACCAAATATAGGGttgatttcactcttttttttttcgcaaAAGATCTACATCTATAAAGTGTGGTCAGtaattatttttaatgaatgaaaaccgatcattgacacaca

Function

symbol description
rtfdc1 Predicted to enable DNA binding activity. Predicted to be involved in cellular response to hydroxyurea; regulation of DNA stability; and site-specific DNA replication termination at RTS1 barrier. Predicted to be located in replication fork. Predicted to be active in nucleus. Orthologous to human RTF2 (replication termination factor 2).

NR:

description
protein RTF2 homolog isoform X2

GO: NA

KEGG:

id description
K25186 RTF2; replication termination factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798351.1 True 1549 mRNA 0.45 9 24436940 24453147

Neighbor

gene id symbol gene type direction distance location
tfap2c tfap2c,LOC104955609 coding downstream 5261 24419568 ~ 24431679 (-)
tbc1d20 tbc1d20 coding downstream 589041 23837665 ~ 23847899 (-)
necab3 necab3,LOC103362929 coding downstream 612529 23779482 ~ 23824411 (-)
snta1 snta1 coding downstream 712291 23687128 ~ 23724649 (-)
st7l LOC103355879,LOC104945807,LOC106517636 coding downstream 901662 23512436 ~ 23535278 (-)
tgm5l LOC104962776 coding upstream 68391 24521538 ~ 24528024 (-)
pxmp4 pxmp4,LOC103464829 coding upstream 78325 24531472 ~ 24533150 (-)
itcha itch,LOC104922030,LOC103355463 coding upstream 82283 24535430 ~ 24553883 (-)
LOC120557704 LOC103355459 coding upstream 134465 24587612 ~ 24591697 (-)
LOC120557657 LOC104922035 coding upstream 151609 24604756 ~ 24607394 (-)
G41352 NA non-coding downstream 98584 24337911 ~ 24338356 (-)
LOC120558071 LOC107712283,LOC107663761,LOC107746645,LOC107662224 non-coding downstream 379875 24056181 ~ 24057065 (-)
G41276 tox2,LOC106920125,LOC107103089 non-coding downstream 782960 23633778 ~ 23653980 (-)
G41228 NA non-coding downstream 1073114 23363048 ~ 23363826 (-)
G41212 LOC106531700,LOC106566052,LOC102779441,LOC107745329 non-coding downstream 1143865 23289607 ~ 23293075 (-)
G41397 rdh5,LOC100710882,LOC102797111 non-coding upstream 110198 24563345 ~ 24563682 (-)
G41398 rdh5,LOC104964277 non-coding upstream 110616 24563763 ~ 24565758 (-)
G41406 NA non-coding upstream 126604 24579751 ~ 24583281 (-)
LOC120557658 NA non-coding upstream 157076 24610223 ~ 24625025 (-)
G41474 NA non-coding upstream 373322 24826469 ~ 24827176 (-)
G41167 slc32a1,LOC103135573,LOC102216414,LOC106515126 other downstream 1283204 23151085 ~ 23153736 (-)
LOC120556776 LOC102209485,LOC104950336 other downstream 1470977 22931491 ~ 22965963 (-)
rpl29 NA other downstream 2661522 21771585 ~ 21775418 (-)
iars1 iars other downstream 2666402 21715865 ~ 21770538 (-)
slc6a11b slc6a11 other downstream 2886431 21520669 ~ 21550509 (-)
LOC120556806 NA other upstream 432923 24886070 ~ 24888226 (-)
manbal manbal other upstream 569289 25022436 ~ 25025061 (-)
ncoa5 NA other upstream 857598 25310745 ~ 25357934 (-)
tspan2a tspan2 other upstream 1270821 25723968 ~ 25740106 (-)
LOC120557963 grm4,LOC108231655,LOC100700221,LOC102289456,LOC104955002 other upstream 1871599 26324746 ~ 26483541 (-)

Expression


Co-expression Network