tbc1d20 (tbc1d20)


Basic Information

Item Value
gene id tbc1d20
gene name tbc1d20
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23837665 ~ 23847899 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797089.1
TCAGTCTGAGCAGGGAGGCTAGCTAAAGCTAAAGCTTGTATCCTATTTATTAGTCGCTTTTGTCAATGTAAACATGTAGCCGTTCCACGGGTGTAACCGTATTGCTATTAAGCGGCGTTTACTAATTGTTAACCAGTGTGTCAATAGTACGAATAATGATGGCTGTGTCGCCGAAAATAGCAGGGCTGTGTAACGGTAGAGTTAGTAtgacaactagctagctaacactgaatagctagctagctaactatcgGGCCGTGTTTGTATGAGGCTGGCCTTGCAGCTTCCAGTTGACAGCCATGAAGGGCTAACTCGAGGTTGGCCAAGCAAAGGAGGATGGCAAGTAATGCAAATTAGCAAGGACACATCAAGAACTGGAGAAACAATGAATACATCTAGAAGTGCTGGTGCCTCGTCACctgtaaatggaaaacaagTGAATGACTGGGATACCAGACGGAAGAGGAAAATTGCGGACATCAAACAGGCCCTTAGTGCGAGTCCAGTGGATGTGGCTGCTTTGAGGAGGATGGCTATCAGTGAAGGAGGTCTGCTGACTGATGAGATACGCTGTCAAGTCTGGCCTCGGCTTCTCAACGTCCCTCCTCACGTCTTGGAACAAGAGCCAGAAACTGTAGAGCGGGAGAATAACAAAGACTATAACCAGGTGCTGCTGGATGTCCAGCGGTCGCTGAGGAGGTTTCCACCtgGTATGCCAGATGAGCAGAGGGAGGGTCTCCAGGAAGAACTAATTGACATCATCCTCCTAGTTCTGAAACGCAATCCCCAGCTGCATTACTACCAAGGATACCATGACATTGTTGTCACCTTCTTATTGGTCCTAGGAGAGCGCCTTGCAACTGCTCTTGTGGAAAAGCTCTCCACGCACCACCTCAGGGACTTCATGGATCCTACCATggacaacacaaaacacattctgAACTATTTGATGCCCATCATTGACAGGGTCAACCCTGAGGTGCATGACTTCATGCAACAGGCTGAGGTGGGGACAGTCTTCGCCCTCAGTTGGCTGATCACCTGGTTTGGCCATGTCCTGTCAGACTTCCGCCATGTTGTCCGGTTGTATGACTTCTTCCTGGCCTGCCATCCATTGATGCCCATCTACTTTGCTGCTGTGATCGTACTGTACAGAGAAGAGGAGGTGTTGGAGTGTGAATGCGATATGGCCATGGTTCATCACCTGCTGTCTCAGATTCCCCAGGATCTGCCATATGAGACACTCATCAGCCGAGCAGGAGACCTCTTTGTCCAGTTCCCTCCCTCTGAAATGGCCAGAGAGGCTGCCTCACATGACAGCATGGCAGCCTCTACCTTCAAGGACTTTGACCTTGCGTCCACTCAACAGCGACCAGACTCTGTTCTCCGTCGCCGACGCAGACAGAAGCAGGCTGCACTCGACAGCTCAGCAGCGAACGCAGTAGTGGCGGTAGCCCGACCTTCAGCGGCACGGCGGCTTGTTCGCCTGGCTGTCATGGGTCTCACGGTGGCTTTAGGGGCAGCAGCTCTCGCTGTGGTCAACACTGCCTTGGAGTGGGCCCCCAAACTGGACTTGTTTCCTTGAACGGCTCCTCTTTTACCCCTATGCTCCAACTGTATCTGTCCTTGACTGGTTCTAACTGGTTGGTCTGTTTCCAAGAAAACTCTTAATTTATGGAACCACAAACCATGCAGTCGATAACACTGTCTGGAGTTTACCCTCTAAACTGAAGTTAAAGGTCCTCTTTCGTCTTCTAGGATGTGTCTTAACATCCTACGTAGGGCTTCTCAGGCTCCAGCTGAAGGTCCTTTTGATGACTCCTGGAGAGCCTGCACCAGTATAACAACAACTTCTGCTGGTTTGTGAAATGAAGAATCCACCCTGTTATAATGAAGAGACTGTTTTTCTAAGAACTATTACTGATGGGGTCATtgttaaagtttatttatatttggtATTAGGATAATCTGATATTGAGTTATGCTTACAGAGATGTATGCTGAAAGCTTGGTGGACTCACTACACTTGAAACTGCTGCCAATTAAGAGAGCTGGAGTGAATGAATGAGTTTGTGTGCGTACGTGTGCGCGCGGTTGGTCGCAACccatttgttgtttatttgataCCTGGACTGAGACCAAATAGAGGATTGTTAGAGTCCTCTCTATAATTTTCAGCTTCTTAATTCATAGGTATGTAAGCAGCTGTATAGAGAGATGGTCATGACACACAGGCACATTTTAAGGCCACCATTGTATTatgttttaggtcattttgtcactttttttaagaaGTTCAAataagcctttttagtcaagAAACAAATCTTCCTCTCTGGGACAGCGTATCTGTAAAACATGTCAACAGTTTTCACCATACACATTTTAATTCTGGCTCATGGTTGGAGTCAGCAAAACTATCTGCAAGAAGTTTTAAACAAAATGTGATTAGTGTAATCAAAGTAAATATTGTATCTCAAGACCTCATAGGATTAGACCCCCAGAATGTAGTACAGCTTTCACAGTCCAGGAAGTCAAAAATCTACCAATATCGATGTTTGTTTTACTAGAACTTTCTAATTATTCCGTCACCTAACTGTTTGGTTGCAAAATGGGTCTGTGTTTCATGGCCTGTAATGATTAGGGTATGCTTTCTGCGTCACTTTTTATGGAGTAGATGATTAAATCTCTCCTTAGAGTTTAGCAACACACGCACTCACTCAATGCCTCGTAACATAAAATATCAGAGCTGGTATAAACAGCAGGTAAAATGAATTTGAGAATGTGGTCTTAGGGTTGGCACCGTGGGGACCCAGTTTGCACTGACTGCATTAGTTTTGCAAAATCACTTTAAAATCAGTTTGATAGGTGCTTTTCTCACTGTAAGGGTGCTCCTGTTGGGGAGAAACACCCGAGCCTTCAAATGAATGCTATCcaaggtttttttgttttaaacctAAATTTAGCTTTAACACATGCTATTTTAGTAAGTTGGATTGCTTTGAGTGTAGCATTTGCATTTCAGAGGCAGTCCAGCTCATTCCAATGTTCCAGTCATTTTCATTTGATCACATATTTAAAGTAATGGGGGTTTGCTTAGGTTTCAGTCATTCTAAGATAGTGAATTGGGTTGTCTGTAGTCTTTATGATGTATTTTGCTTAACAGAATTATTGACTTCTAGGTCACCTACATTGTACGGCACAACAGCTAGTCAGTTTGCTGTATTAGGAACTAAATTCTTGGGCATCATCCTATATCATggctgattggtttattgcctTTATAGTGAACCACTGGTTCAGCTGGTAGGGGATCTACAAAACTCATCAAAATGAAGGTGACCTGGAACATATCTAAGGACGCTCTGAGAGTGTAGCTGATCAGCAGTATTGTTATGCACCATGTATCTGCACTTGGTGGTTTTCATTTGTCAATGCACTAAATGATTTACCTGccttttatgtttgttttgttataatGAAACTGTCCTACTAATGTAAAGTTGTACAAGAGAATGCTAATAAATTAGAGTGAAAATGTT

Function

symbol description
tbc1d20 Predicted to enable GTPase activator activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in Warburg micro syndrome 4. Orthologous to human TBC1D20 (TBC1 domain family member 20).

NR:

description
PREDICTED: TBC1 domain family member 20 isoform X1

GO:      GO:0005097,GO:0032851

KEGG:

id description
K20372 TBC1D20, GYP8; TBC1 domain family member 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797089.1 True 3542 mRNA 0.44 8 23837665 23847899

Neighbor

gene id symbol gene type direction distance location
necab3 necab3,LOC103362929 coding downstream 13254 23779482 ~ 23824411 (-)
snta1 snta1 coding downstream 113016 23687128 ~ 23724649 (-)
st7l LOC103355879,LOC104945807,LOC106517636 coding downstream 302387 23512436 ~ 23535278 (-)
LOC120557287 LOC103355884,LOC103135478,LOC106955534 coding downstream 326786 23370935 ~ 23510879 (-)
inka2 fam212b coding downstream 478299 23344859 ~ 23359366 (-)
tfap2c tfap2c,LOC104955609 coding upstream 571669 24419568 ~ 24431679 (-)
rtf2 rtfdc1 coding upstream 589041 24436940 ~ 24453147 (-)
tgm5l LOC104962776 coding upstream 673639 24521538 ~ 24528024 (-)
pxmp4 pxmp4,LOC103464829 coding upstream 683573 24531472 ~ 24533150 (-)
itcha itch,LOC104922030,LOC103355463 coding upstream 687531 24535430 ~ 24553883 (-)
G41276 tox2,LOC106920125,LOC107103089 non-coding downstream 183685 23633778 ~ 23653980 (-)
G41228 NA non-coding downstream 473839 23363048 ~ 23363826 (-)
G41212 LOC106531700,LOC106566052,LOC102779441,LOC107745329 non-coding downstream 544590 23289607 ~ 23293075 (-)
G41197 NA non-coding downstream 585110 23249936 ~ 23252555 (-)
G41194 ipo9 non-coding downstream 589770 23247187 ~ 23247895 (-)
LOC120558071 LOC107712283,LOC107663761,LOC107746645,LOC107662224 non-coding upstream 208282 24056181 ~ 24057065 (-)
G41352 NA non-coding upstream 490012 24337911 ~ 24338356 (-)
G41397 rdh5,LOC100710882,LOC102797111 non-coding upstream 715446 24563345 ~ 24563682 (-)
G41398 rdh5,LOC104964277 non-coding upstream 715864 24563763 ~ 24565758 (-)
G41406 NA non-coding upstream 731852 24579751 ~ 24583281 (-)
G41167 slc32a1,LOC103135573,LOC102216414,LOC106515126 other downstream 683929 23151085 ~ 23153736 (-)
LOC120556776 LOC102209485,LOC104950336 other downstream 871702 22931491 ~ 22965963 (-)
rpl29 NA other downstream 2062247 21771585 ~ 21775418 (-)
iars1 iars other downstream 2067127 21715865 ~ 21770538 (-)
slc6a11b slc6a11 other downstream 2287156 21520669 ~ 21550509 (-)
LOC120556806 NA other upstream 1038171 24886070 ~ 24888226 (-)
manbal manbal other upstream 1174537 25022436 ~ 25025061 (-)
ncoa5 NA other upstream 1462846 25310745 ~ 25357934 (-)
tspan2a tspan2 other upstream 1876069 25723968 ~ 25740106 (-)
LOC120557963 grm4,LOC108231655,LOC100700221,LOC102289456,LOC104955002 other upstream 2476847 26324746 ~ 26483541 (-)

Expression


Co-expression Network