tgm5l (LOC104962776)


Basic Information

Item Value
gene id tgm5l
gene name LOC104962776
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24521538 ~ 24528024 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796926.1
GCATTGAGAAAGAGACACTAACAAATGGAAGGTGAGATCTCTCTTCAGAAAGAcatgaaaatacaaaatgtcAACCTGGAAAAATCTGAAAACCAGGagagacacaggacacagggcTTCAGCAGCTCCAAAGCCCTGGTGGTGCGAAGAGGAGCCCCATTTAGAGTCAGTCTACAACTGAAGGGCCAAGCCTTTAACCCCAAGACTGACTCTGTGAGCATCAAAGTTACACTAGgCCGCCTATATATGGTAATGCCAGTCACATTCTCCAAGAACGTTCCTTCCTCCCAATGGAAAGCCTATATGGACCCAGAGGGCCTGAACCTCCAGAACCCCTCCATATTCATCTCCTCTCCTGCCTCCGCCTCCGTGGGCTGCTATGGatttcagctgtgtgtgttgacTCAGGGCAGCCAAAAGACCTGTGCGTTTGGCAAATTCATCCTGCTCTGCAATCCCTGGTGTCATGAGGATGTTGTGTATATTCCTTTTGAGGACCAGCGACAAGAGTACATCCAGAACGACTCTGGGCTGCTGTTTATAGGGACAGCTATGAACATTGTGTCAAGACCATGGTCTTTTGATCAGTTTGAGCCTGGTATTCTGGAGGCGTGCCTGGATCTGCTCCAAGTCAGCCCTCAGCACCAAAAGAACGGAAGGATGGACTACCTGAACCGAAGCAACCCTATCTACATCAGCCGGGTCGTGTCTGCCATGATCAACAGTGAAGACGACTGTGGTGTGCTGAAAGGGAAATGGACAGGTGACTTCAAACAAGGAGTTAATCCCTCCTTGTGGACTGGGAGTGGGGACATCTTGACACAGTGGGCTGCGTCTGGTTTCAGCCCAGTCCAGTTTGGACAGTGCTGGGTGTTTGCAGCTGTCATGTGCACAGTGATGAGGGTTCTTGGCATTCCCTGCCGTGTCGTCACAAACTTCAACTCTGCTCATGACACCAATGCCAACCTGGTGATTGAGGAGTACTATAGTGAAACAGGGCAGAAGCTGAACCTCAGTAAAGACACCATATGGAACTTCCATGTGTGGGTGGAGTGCTGGATGACTCGCCGGGATTTGGGATCTGGAATGGATGGCTGGCAGGTTCTGGACCCGACCCCCCAGGAAAGGAGTGGAGGAGTGTTCTGCTGTGGCCCATCACCAGTCAAAGCAATCAAAGATCGACGCATCGACCTGTTTTATGACATCCCCTTTGTCTACGCCGAGGTGAACGCCGACGTCCACTCAATCGTAGTGAGCGAGGGTCGGGTGGTCAGCTACagcaaagacacagagagagtggGATCCCTCATCTGCACCAAAGCTATTGGTTTCCCCAGACACCAGAACATCACAGGAGACTACAAATCCATCAAAAGCCCGACTTCAACACTTTCATTGAGAAGTTCCACAAGTTCAGAGGACTCGACATTAAGAAGAGGCTCAACCAAAGGGGTGTTAGTCTTCCTGACCCTGGATAATGCTCCTGTTGCTGGGGGGCCTGTCCGCTTCACAGTGAAAGTCATCAACAAGCAGAAGGTTGCCAAGAAGATGAGGTTGCATCTCAACGCCCAGGctaaaaaatacaacaacagcCCCTCAGACACCTTCTGGGAAACCCACGGTGTCTTACAACTGGCCCCCATGGAAGCTAAGGTTATTCAGCAGCAGATCCTCCCAGACCAGTATGAGTGTGTGGTGGGAGATGACCTGATAAACCTTGCAGTAGTCCTGGAGGACATGGCCAGTCAGGAGCGGGTCCTGGCCTCAGAGGAGTTCAATATTACCAGCTCACAGCTCACCATACAGATTGCAGATAAAGACTTGATTGTGAACAAAGAGCAGACTGCCACAGTGATCTTCACCAACCCATTTTCTCAGCCGGTCAGCGGAGTACTGACCGTAGCTGGGGCCGGGCTGACTCAGGGCAAGGTTCACTTCAGGATGCTCCCGCTGCGTCCAGGAGGACAAGTAGAGCAGCTCATTACCTTCATCCCCAGCAGTGTGGGAGCAAAGATGCTGCAGGCCAGCCTGTCACTCACAAACATCAACTCCACTATCAGAGGCTTCAAGATGTTCTCCGTCCTCAGAGCTTAGATCctgttttggtattttttttccttAGTTGTCAACTTTGGGCAGGATACTTAAATTTGTGATGTCACCATTTGTCagtgtcttttttatttatgttttgctAAAGTTAAAACTAAGTCACCAAATTGAAGCCAGAAGATGGCAACCATGTGGCAGAAAGAAACATAAAGATTGACGATGAAGATATTGTCAGCccttatgtttttatattgctTTGTATGATATAAATGTGAAtgtaaataatatttattttaaattgataTTTATTTTGCTATTTATGTGTTCAAACCATGAAAAGTAACACTTTTCTACAAACATTTTAACATGGATTATGAtgctttttgctttgtttgaacaatcaaataaaacgtgtttatatCTA
>XM_039796928.1
AGGTGTATATAGCGGTAGAGCCTGACAGCAGGGACATACAGCATTGCATTGAGAAAGAGACACTAACAAATGGAAGAcatgaaaatacaaaatgtcAACCTGGAAAAATCTGAAAACCAGGagagacacaggacacagggcTTCAGCAGCTCCAAAGCCCTGGTGGTGCGAAGAGGAGCCCCATTTAGAGTCAGTCTACAACTGAAGGGCCAAGCCTTTAACCCCAAGACTGACTCTGTGAGCATCAAAGTTACACTAGgCCGCCTATATATGGTAATGCCAGTCACATTCTCCAAGAACGTTCCTTCCTCCCAATGGAAAGCCTATATGGACCCAGAGGGCCTGAACCTCCAGAACCCCTCCATATTCATCTCCTCTCCTGCCTCCGCCTCCGTGGGCTGCTATGGatttcagctgtgtgtgttgacTCAGGGCAGCCAAAAGACCTGTGCGTTTGGCAAATTCATCCTGCTCTGCAATCCCTGGTGTCATGAGGATGTTGTGTATATTCCTTTTGAGGACCAGCGACAAGAGTACATCCAGAACGACTCTGGGCTGCTGTTTATAGGGACAGCTATGAACATTGTGTCAAGACCATGGTCTTTTGATCAGTTTGAGCCTGGTATTCTGGAGGCGTGCCTGGATCTGCTCCAAGTCAGCCCTCAGCACCAAAAGAACGGAAGGATGGACTACCTGAACCGAAGCAACCCTATCTACATCAGCCGGGTCGTGTCTGCCATGATCAACAGTGAAGACGACTGTGGTGTGCTGAAAGGGAAATGGACAGGTGACTTCAAACAAGGAGTTAATCCCTCCTTGTGGACTGGGAGTGGGGACATCTTGACACAGTGGGCTGCGTCTGGTTTCAGCCCAGTCCAGTTTGGACAGTGCTGGGTGTTTGCAGCTGTCATGTGCACAGTGATGAGGGTTCTTGGCATTCCCTGCCGTGTCGTCACAAACTTCAACTCTGCTCATGACACCAATGCCAACCTGGTGATTGAGGAGTACTATAGTGAAACAGGGCAGAAGCTGAACCTCAGTAAAGACACCATATGGAACTTCCATGTGTGGGTGGAGTGCTGGATGACTCGCCGGGATTTGGGATCTGGAATGGATGGCTGGCAGGTTCTGGACCCGACCCCCCAGGAAAGGAGTGGAGGAGTGTTCTGCTGTGGCCCATCACCAGTCAAAGCAATCAAAGATCGACGCATCGACCTGTTTTATGACATCCCCTTTGTCTACGCCGAGGTGAACGCCGACGTCCACTCAATCGTAGTGAGCGAGGGTCGGGTGGTCAGCTACagcaaagacacagagagagtggGATCCCTCATCTGCACCAAAGCTATTGGTTTCCCCAGACACCAGAACATCACAGGAGACTACAAATCCATCAAAAGCCCGACTTCAACACTTTCATTGAGAAGTTCCACAAGTTCAGAGGACTCGACATTAAGAAGAGGCTCAACCAAAGGGGTGTTAGTCTTCCTGACCCTGGATAATGCTCCTGTTGCTGGGGGGCCTGTCCGCTTCACAGTGAAAGTCATCAACAAGCAGAAGGTTGCCAAGAAGATGAGGTTGCATCTCAACGCCCAGGctaaaaaatacaacaacagcCCCTCAGACACCTTCTGGGAAACCCACGGTGTCTTACAACTGGCCCCCATGGAAGCTAAGGTTATTCAGCAGCAGATCCTCCCAGACCAGTATGAGTGTGTGGTGGGAGATGACCTGATAAACCTTGCAGTAGTCCTGGAGGACATGGCCAGTCAGGAGCGGGTCCTGGCCTCAGAGGAGTTCAATATTACCAGCTCACAGCTCACCATACAGATTGCAGATAAAGACTTGATTGTGAACAAAGAGCAGACTGCCACAGTGATCTTCACCAACCCATTTTCTCAGCCGGTCAGCGGAGTACTGACCGTAGCTGGGGCCGGGCTGACTCAGGGCAAGGTTCACTTCAGGATGCTCCCGCTGCGTCCAGGAGGACAAGTAGAGCAGCTCATTACCTTCATCCCCAGCAGTGTGGGAGCAAAGATGCTGCAGGCCAGCCTGTCACTCACAAACATCAACTCCACTATCAGAGGCTTCAAGATGTTCTCCGTCCTCAGAGCTTAG
>XM_039796929.1
AGAGGAGCCCCATTTAGAGTCAGTCTACAACTGAAGGGCCAAGCCTTTAACCCCAAGACTGACTCTgCCGCCTATATATGGTAATGCCAGTCACATTCTCCAAGAACGTTCCTTCCTCCCAATGGAAAGCCTATATGGACCCAGAGGGCCTGAACCTCCAGAACCCCTCCATATTCATCTCCTCTCCTGCCTCCGCCTCCGTGGGCTGCTATGGatttcagctgtgtgtgttgacTCAGGGCAGCCAAAAGACCTGTGCGTTTGGCAAATTCATCCTGCTCTGCAATCCCTGGTGTCATGAGGATGTTGTGTATATTCCTTTTGAGGACCAGCGACAAGAGTACATCCAGAACGACTCTGGGCTGCTGTTTATAGGGACAGCTATGAACATTGTGTCAAGACCATGGTCTTTTGATCAGTTTGAGCCTGGTATTCTGGAGGCGTGCCTGGATCTGCTCCAAGTCAGCCCTCAGCACCAAAAGAACGGAAGGATGGACTACCTGAACCGAAGCAACCCTATCTACATCAGCCGGGTCGTGTCTGCCATGATCAACAGTGAAGACGACTGTGGTGTGCTGAAAGGGAAATGGACAGGTGACTTCAAACAAGGAGTTAATCCCTCCTTGTGGACTGGGAGTGGGGACATCTTGACACAGTGGGCTGCGTCTGGTTTCAGCCCAGTCCAGTTTGGACAGTGCTGGGTGTTTGCAGCTGTCATGTGCACAGTGATGAGGGTTCTTGGCATTCCCTGCCGTGTCGTCACAAACTTCAACTCTGCTCATGACACCAATGCCAACCTGGTGATTGAGGAGTACTATAGTGAAACAGGGCAGAAGCTGAACCTCAGTAAAGACACCATATGGAACTTCCATGTGTGGGTGGAGTGCTGGATGACTCGCCGGGATTTGGGATCTGGAATGGATGGCTGGCAGGTTCTGGACCCGACCCCCCAGGAAAGGAGTGGAGGAGTGTTCTGCTGTGGCCCATCACCAGTCAAAGCAATCAAAGATCGACGCATCGACCTGTTTTATGACATCCCCTTTGTCTACGCCGAGGTGAACGCCGACGTCCACTCAATCGTAGTGAGCGAGGGTCGGGTGGTCAGCTACagcaaagacacagagagagtggGATCCCTCATCTGCACCAAAGCTATTGGTTTCCCCAGACACCAGAACATCACAGGAGACTACAAATCCATCAAAAGCCCGACTTCAACACTTTCATTGAGAAGTTCCACAAGTTCAGAGGACTCGACATTAAGAAGAGGCTCAACCAAAGGGGTGTTAGTCTTCCTGACCCTGGATAATGCTCCTGTTGCTGGGGGGCCTGTCCGCTTCACAGTGAAAGTCATCAACAAGCAGAAGGTTGCCAAGAAGATGAGGTTGCATCTCAACGCCCAGGctaaaaaatacaacaacagcCCCTCAGACACCTTCTGGGAAACCCACGGTGTCTTACAACTGGCCCCCATGGAAGCTAAGGTTATTCAGCAGCAGATCCTCCCAGACCAGTATGAGTGTGTGGTGGGAGATGACCTGATAAACCTTGCAGTAGTCCTGGAGGACATGGCCAGTCAGGAGCGGGTCCTGGCCTCAGAGGAGTTCAATATTACCAGCTCACAGCTCACCATACAGATTGCAGATAAAGACTTGATTGTGAACAAAGAGCAGACTGCCACAGTGATCTTCACCAACCCATTTTCTCAGCCGGTCAGCGGAGTACTGACCGTAGCTGGGGCCGGGCTGACTCAGGGCAAGGTTCACTTCAGGATGCTCCCGCTGCGTCCAGGAGGACAAGTAGAGCAGCTCATTACCTTCATCCCCAGCAGTGTGGGAGCAAAGATGCTGCAGGCCAGCCTGTCACTCACAAACATCAACTCCACTATCAGAGGCTTCAAGATGTTCTCCGTCCTCAGAGCTTAGATCctgttttggtattttttttccttAGTTGTCAACTTTGGGCAGGATACTTAAATTTGTGATGTCACCATTTGTCagtgtcttttttatttatgttttgctAAAGTTAAAACTAAGTCACCAAATTGAAGCCAGAAGATGGCAACCATGTGGCAGAAAGAAACATAAAGATTGACGATGAAGATATTGTCAGCccttatgtttttatattgctTTGTATGATATAAATGTGAAtgtaaataatatttattttaaattgataTTTATTTTGCTATTTATGTGTTCAAACCATGAAAAGTAACACTTTTCTACAAACATTTTAACATGGATTATGAtgctttttgctttgtttgaacaatcaaataaaacgtgtttatatCTA

Function

NR:

description
protein-glutamine gamma-glutamyltransferase 5-like isoform X2

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796926.1 True 2476 mRNA 0.48 14 24521538 24527979
XM_039796928.1 False 2118 mRNA 0.51 14 24521920 24528024
XM_039796929.1 False 2307 mRNA 0.48 13 24521538 24527672

Neighbor

gene id symbol gene type direction distance location
rtf2 rtfdc1 coding downstream 68391 24436940 ~ 24453147 (-)
tfap2c tfap2c,LOC104955609 coding downstream 89859 24419568 ~ 24431679 (-)
tbc1d20 tbc1d20 coding downstream 673639 23837665 ~ 23847899 (-)
necab3 necab3,LOC103362929 coding downstream 697127 23779482 ~ 23824411 (-)
snta1 snta1 coding downstream 796889 23687128 ~ 23724649 (-)
pxmp4 pxmp4,LOC103464829 coding upstream 3448 24531472 ~ 24533150 (-)
itcha itch,LOC104922030,LOC103355463 coding upstream 7406 24535430 ~ 24553883 (-)
LOC120557704 LOC103355459 coding upstream 59588 24587612 ~ 24591697 (-)
LOC120557657 LOC104922035 coding upstream 76732 24604756 ~ 24607394 (-)
LOC120556807 ppp4r1 coding upstream 364283 24892307 ~ 24903557 (-)
G41352 NA non-coding downstream 183182 24337911 ~ 24338356 (-)
LOC120558071 LOC107712283,LOC107663761,LOC107746645,LOC107662224 non-coding downstream 464473 24056181 ~ 24057065 (-)
G41276 tox2,LOC106920125,LOC107103089 non-coding downstream 867558 23633778 ~ 23653980 (-)
G41228 NA non-coding downstream 1157712 23363048 ~ 23363826 (-)
G41212 LOC106531700,LOC106566052,LOC102779441,LOC107745329 non-coding downstream 1228463 23289607 ~ 23293075 (-)
G41397 rdh5,LOC100710882,LOC102797111 non-coding upstream 35321 24563345 ~ 24563682 (-)
G41398 rdh5,LOC104964277 non-coding upstream 35739 24563763 ~ 24565758 (-)
G41406 NA non-coding upstream 51727 24579751 ~ 24583281 (-)
LOC120557658 NA non-coding upstream 82199 24610223 ~ 24625025 (-)
G41474 NA non-coding upstream 298445 24826469 ~ 24827176 (-)
G41167 slc32a1,LOC103135573,LOC102216414,LOC106515126 other downstream 1367802 23151085 ~ 23153736 (-)
LOC120556776 LOC102209485,LOC104950336 other downstream 1555575 22931491 ~ 22965963 (-)
rpl29 NA other downstream 2746120 21771585 ~ 21775418 (-)
iars1 iars other downstream 2751000 21715865 ~ 21770538 (-)
slc6a11b slc6a11 other downstream 2971029 21520669 ~ 21550509 (-)
LOC120556806 NA other upstream 358046 24886070 ~ 24888226 (-)
manbal manbal other upstream 494412 25022436 ~ 25025061 (-)
ncoa5 NA other upstream 782721 25310745 ~ 25357934 (-)
tspan2a tspan2 other upstream 1195944 25723968 ~ 25740106 (-)
LOC120557963 grm4,LOC108231655,LOC100700221,LOC102289456,LOC104955002 other upstream 1796722 26324746 ~ 26483541 (-)

Expression


Co-expression Network