RNA id: XM_039799400.1



Basic Information


Item Value
RNA id XM_039799400.1
length 694
RNA type mRNA
GC content 0.46
exon number 3
gene id wfdc2
representative False

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24794869 ~ 24796108 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATTTGTCCAAACAGGAGTACATTCTTGTGAGAAAGAAGTTAACATGGAGCAACACTGGTCCGCAGTTTGTGCAGTGATTTTAGCACTCGGTGCATCGGTGCACTTTGACATTGTTTTTGCTGCAGAAGCTGATGGCAATTTAACAGCTAAACCAGGAGTGTGTCCTCGCAGGCACTGGGGCTCAGGACTGTGTGCTGAATTTTGCTCCAATGACAGCGACTGCCCCAAGGATGAGAAGTGCTGCCACAATGGATGTGGACACGAGTGCATTGCACCATACACAGTGAAGCCGGGTCGCTGCGCCCTTCCCCAGGGAACCCCCATGTGTGCTGAGTACTGCTACCACGATGGTCAGTGTCCAGGAGAGCAGAAGTGCTGCAAGACAACCTGCGGCCACGCCTGCAGTGAGCCCTGCTGATTGGACAGCTCTGCGACACTTCGTTAATCTTTAATGCAACAACGCAGAAAAAGCATCATGTTCATTTTCCCTACCTTTTCAACTCCGTAGTAGCACACTTTGGTACAATACTTGAGCATTGGCTTGCACAAAGTTGGATtctttgtgggaaaaaaaagttaattgttTTCCTTCAATCTAGATAAGATGCTATTCTatgtactttaagtacagtcatgtgaaacaattaggacacccatgctaaagttgactaaaaagaggaataaaaaaaaatca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU70571 lncRNA downstream 88865 24705517 ~ 24706004 (-) True G52818
TU70500 lncRNA downstream 326850 24466034 ~ 24468019 (-) True G52776
TU70480 lncRNA downstream 408248 24385903 ~ 24386621 (-) True G52765
TU70443 lncRNA downstream 427400 24367149 ~ 24367469 (-) True G52746
TU70422 lncRNA downstream 467893 24325020 ~ 24326976 (-) True G52732
TU70661 lncRNA upstream 124608 24920716 ~ 24945315 (-) True G52883
XR_005639213.1 lncRNA upstream 129649 24925757 ~ 24928651 (-) True LOC120559116
TU70674 lncRNA upstream 163683 24959791 ~ 24960183 (-) True G52893
TU70725 lncRNA upstream 194875 24990983 ~ 24996820 (-) True G52935
TU70727 lncRNA upstream 202010 24998118 ~ 24999647 (-) True G52936
XM_039801547.1 mRNA downstream 9864 24750431 ~ 24785005 (-) False phactr3a
XM_039801548.1 mRNA downstream 9864 24750431 ~ 24785005 (-) False phactr3a
XM_039801546.1 mRNA downstream 9864 24750431 ~ 24785005 (-) True phactr3a
XM_039801004.1 mRNA downstream 75195 24715722 ~ 24719674 (-) True fam217ba
XM_039799331.1 mRNA downstream 96887 24688599 ~ 24697982 (-) True edn3b
XM_039801514.1 mRNA upstream 151653 24947761 ~ 24958164 (-) True LOC120559637
XM_039801516.1 mRNA upstream 151653 24947761 ~ 24958161 (-) False LOC120559637
XM_039801734.1 mRNA upstream 173836 24969944 ~ 24990360 (-) True LOC120559745
XM_039800438.1 mRNA upstream 203770 24999878 ~ 25006135 (-) True ttc34
XM_039799792.1 mRNA upstream 212170 25008278 ~ 25020847 (-) False si:ch211-112c15.8
TU70611 other downstream 41782 24750440 ~ 24753087 (-) False phactr3a
TU70430 other downstream 455413 24335149 ~ 24339456 (-) False masp2
TU70089 other downstream 1475185 23308500 ~ 23319684 (-) True G52501
XR_005639228.1 other downstream 1575969 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other downstream 1575969 23214098 ~ 23218900 (-) False si:ch211-150o23.3
TU70950 other upstream 1151273 25947381 ~ 25972172 (-) False acot7
TU71098 other upstream 1416885 26212993 ~ 26214882 (-) True G53196
XR_005639354.1 other upstream 1850706 26646814 ~ 26658321 (-) False dcp1a
XR_005639355.1 other upstream 1850706 26646814 ~ 26658321 (-) False dcp1a
XR_005639353.1 other upstream 1850706 26646814 ~ 26658321 (-) False dcp1a

Expression Profile