RNA id: XM_039800740.1


Basic Information

Item Value
RNA id XM_039800740.1
length 4097
RNA type mRNA
GC content 0.50
exon number 23
gene id cntn3a.2
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24390197 ~ 24427068 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCCCAGCGCTGCTGGTTCTGGCTGCTCCATCATCGCCTCTCGCTGCCGTACAGCCCACTTCTTCTTCGCATCGAGAGCTGACTTGATGCGCATAATAAATCATCACTACAAGATTCCCTTTCAAGCCCAATTTCAGACCTACGCGTTTTGGATTTGAGAGCGTTAACACAGGCGAGAGTCGAGCCTCTTAACTGGGGATGTTTCAAATGTGATTTAGCACGGCAAACAACgtgggtgttgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgttgtttttttttttggtggggagTGGAGGAGAAGGGGGAGAGCAGCGATATGAAACGCGTGTGTTTATGTCTCCTGCGTTACCCGTTATCTTTGACTGATCACCGGATTTTTCACCTGTATGAACGACCTTGCGATTGTGACCGAAATCTTTCCTAAAAGGGTTTCCATGGAGGATCAATCTGTCGCTTTTTCCGTGAGGGCTGAATTTGTTTTCTGCTGGTCTCAAGATATTTCAAGATAAGAgGTCAAGCTCCCCTCTCTCGGAGAACAAGAGTGCCATTTCGAAGCTTATTGGATGAAAGTCTCATTTGCCCTTCGCTGCCAAAGATGACGTTGCCATGGAAACAGCTTTTACTGTTATCAATCATCGACTGTCTAGCAGATTGTCTGGACAGTGGATCATACCATGGTCCAAAATGGAGGATGGAGCCAGGTGACTTGTTCATTCCTGTCGACTCCATAGAAGAAGAAGCTACTCTGACCTGTGATGCAAAGGGAATGCCACCTCCTCAGTACAGATGGTCATTGAATGGGACTCTCATAAATCTGAGCCTGGATCGCCGGCGGCGTCTGTCTGGGGGCAACCTCATTATAAGCAGTCTGGACCGCTACCAGGATGTAGGGATGTACCAGTGCATGGCGTTCAACACTGTAGGAGCTATCCTCAGCAGGAGAGCAAGTCTGCAGTTTGCCTACCTGGATCATTTCAAAGTCCACACCAGAAGCGCAGTGTCTGTCCGTGAGGGACAAGGAGTGGTGTTGCTTTGTGGAACGCCCACTTCCTCAGGAGACCTTACGTATGCATGGGTCTTCAATGAGTACCCATACTTTGTTCAACAAGACAATCGGCGTTTCGTCTCCCAGCAGACAGGAAACCTTTACATTGCCAAGGTGGAGCCCTCTGATGTGGGTAACTACACTTGTGTCGTGATGAACAGCATCACAAAGGGCAAAGTTCAGAGCTCACCCACGTCTCTGATCCTCAGGACAGATGGAGTGATGGGTGAATACGAGCCGAAAATAGAAGTTAATTTCCCAGACAATGTACCCGCCGCAAAAGGATCAACAGTTACGCTGGAGTGTTTCGCCCTTGGGAACCCTGTCCCTGAAATCACCTGGAAGAGGGCTAACGGCGTTCCCTTCCCCAGCAAAGTCAAAATGAAGTACTCGAATGCTGTGCTGGAGATCCCCAGCTTTCAGCAGGATGATACAGGAGGATACGAGTGTGTGGCTGAGAACAAGATGGGCAAGAACACAGCTACTGGTCGACTGGCCTTTTATGCCAAGCCTCAGTGGATGCAGGCCATGAAGGACACGGCCCAGGCCATAGAGGAGAGACTATACTGGGAATGCCGAGCCAATGGCAAGCCCAAACCCTCCTACACGTGGCTGAAGAATGGCCAACAGCTACTCTCAGAGGACAGAATCCATGTGGAGGACGGAGTACTGTCAGTGTCGGAGCTGACACTATCTGACGCCGGCATGTACCAGTGTGTGGCTGAGAATAAACACGGAGCAATATATTTTGCTGCTGAACTAATGGTTTTAGCCTCTCCTCCAGACTTCACAGGGAACGTCCTCAGAGCTTTGCTCAAAGCCAAGGCAGGAACCACAGTGACTTTAGAGTGTAAACCCCAGGCCTATCCCATCGCCAGCATTTTATGGAAGAAAGGAAACCTGCCTATCCACACCAGTGACAGAATCACACTTTCCCCAGATGGAACATTGAGGCTTGCTAACGTGAGCAAGTCTGATGCAGGCAGCTATACGTGCTTCGCTAGGAATAGATTTGGCATGTCGAGCACAACTGGACGGCTCCTTGTGACCGATCCGACCAGAATCACCCAGGGGCCAGTGGACATGGAGATCATTGTGGGCGAGAGCATCGTGTTACCTTGTCAGGTCGCCAGTGACCCCGTCCTTGACGTTTCTTTCTCCTGGGCCTTCAACGGACAGCTCATCGCCAAGGGAGACGGTCACTTTGAGCTAGTGGGTGGGAGAACAGCAGGAGATCTGATGATCAGGAACATTCAGCTTTACCATGCCGGAAAATATATCTGTGTGGTGGACACGGATGTGGAGAGCCTGTCAGCCGTGGCTGTATTGATTGTCAAAGGCCCCCCCAGTCCTCCAGATGCTGTGACGGTGGAGGAGGTGACAGACAGTACAGCCCAGCTGGCCTGGAGTCCCGGCAGAGATAACGGCAGCCCCATCACCAATTACCTTATCCAGACCAGGACTCCCTTCACTGTGGGCTGGCAGAGGGTTAACACAGTCCCTGAGATTATCGATAGCAGCACACTGACAGCCACTGTAGTGGATCTCAATGCCTGGGTGGAGTATGAGTTTCGGGTTTTGGCCAAAAACAGTGTTGGGGTTGGAGAACCTAGCCCTGTGTCAGTCAAGACCAGGACAGAGGACGCAGTTCCTGATGCAGCGCCAGGTGACGTGGGCGGAGGAGGTGGAAGCAGATCGGAACTGGTCATCACATGGGAGCCTGTCCCTGAAGAACTACAAAATGGTGAGAGCTTTGGTTACATCATTGCTTTCCGCGCTTTCGGAGAAGTTAGCTGGACTCATGTGGCCACCTCTGCCCCCGGTGCATCGCGCTACGTGTACCGCAACGACAGCATCGCGCCCTTCTCTCCATTTCATGTCAAGGTTGGCACTTACAACAGCAAAGGACAGGGTCCCTTCAGCCCCGTGATCACCATCTACTCTGCAGAAATAGAACCAAGCGGGATGCCAGCGGGAGTTTGGGCCAGAAGTGTCTCAGCCTCTGAGATTGAGGTGAATTGGCAGGCTCTCTCCTTCACCCCTGAAAGGGTTCTGGGCTATGAGGTGGTATACTGGGAAGATGACACTAAACCAGAGACCATGGGAAAGGTTAGGGTGCCTTGGAACCAAACCTCGGTCACAGTGAGTGGCTTGGCAGGAAACACGCAGTATTTCTTAACAGTCAGCGCCTTCAACACAGCAGGCACCGGCCCCTTCCTTCCTGCAATCAATGTCACTATGAAAAAGCCACCACCAGCCCAACCACCGCTGAATGTCGAATGGACCCTAATTGGCTCTCAGCTGTCTCTTTACTGGGAACCTGTGGTGGCAATGGAATCAGAGTCAGAAGTTACAGGCTACCAACTGTCATACAGGAGACAGAGGCACAAAGAGGTTAACACACTCACAACAACCAATTCAACAGCAGAGCTGACCCTCCTCGAGGAGGATGACGACTACATCATCCACATTCAGACGATGAGTGAAGGAGGGCTGGGCCCGGCCTCTGATCCCATACGTATCCACCAACTAAgtATGAGTGCCCGCGGCTCGAGAGCCTGGAGTGCGGacatctccctcctctccctgctGCTCGccatcgcaatatcaacattCAGGTCAACGTGACACAAAGACAAACTCTGCTCTGTTTTTCAACCTTATTATCggtattttttctttcttgaatTTGTGAAAGTTGATgggttttttctctctctcatttttgGAGGTGACCACATACTATTTTGCAGTGATAGATTGCAGGTATGAGGCAGCACAAGACTGGAGCGTACTGTCAGACACTTAATTAACAGTAAATGCttgagcttttttttattacgtAGGTCTGAAATTTTTGCCGGTTGGAACAATGCTCCATTTCAACTCTTTTTTTCAACTCCAGATTGATACAGATGCCTTACTTCCATCCATGTGCCAAAGTAGTTTCTTCTCATTGTTGTTATTGCTCAGATAGCTACATGCTTTCCTCAACATTATTATTGAAGGTCTCAGCGAACCTTGCGGAGGGCCGTGATGAGaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70480 lncRNA downstream 3576 24385903 ~ 24386621 (-) True G52765
TU70443 lncRNA downstream 22728 24367149 ~ 24367469 (-) True G52746
TU70422 lncRNA downstream 63221 24325020 ~ 24326976 (-) True G52732
TU70390 lncRNA downstream 281483 24108484 ~ 24108714 (-) True G52706
TU70373 lncRNA downstream 376946 24012963 ~ 24013251 (-) True G52692
TU70500 lncRNA upstream 38966 24466034 ~ 24468019 (-) True G52776
TU70571 lncRNA upstream 278449 24705517 ~ 24706004 (-) True G52818
TU70661 lncRNA upstream 493648 24920716 ~ 24945315 (-) True G52883
XR_005639213.1 lncRNA upstream 498689 24925757 ~ 24928651 (-) True LOC120559116
TU70674 lncRNA upstream 532723 24959791 ~ 24960183 (-) True G52893
XM_039800738.1 mRNA downstream 5589 24370418 ~ 24384608 (-) True exosc10
XM_039801849.1 mRNA downstream 24686 24360952 ~ 24365511 (-) True srm
XM_039801166.1 mRNA downstream 32186 24356788 ~ 24358011 (-) True cort
XM_039799377.1 mRNA downstream 50758 24335316 ~ 24339439 (-) True masp2
XM_039801311.1 mRNA downstream 71194 24266174 ~ 24319003 (-) True pex14
XM_039800285.1 mRNA upstream 207703 24634771 ~ 24671798 (-) False si:dkey-178k16.1
XM_039800284.1 mRNA upstream 207703 24634771 ~ 24671798 (-) False si:dkey-178k16.1
XM_039800282.1 mRNA upstream 207703 24634771 ~ 24671798 (-) False si:dkey-178k16.1
XM_039800281.1 mRNA upstream 207703 24634771 ~ 24671798 (-) False si:dkey-178k16.1
XM_039800279.1 mRNA upstream 207703 24634771 ~ 24671798 (-) True si:dkey-178k16.1
TU70430 other downstream 50741 24335149 ~ 24339456 (-) False masp2
TU70089 other downstream 1070513 23308500 ~ 23319684 (-) True G52501
XR_005639228.1 other downstream 1171297 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other downstream 1171297 23214098 ~ 23218900 (-) False si:ch211-150o23.3
TU69738 other downstream 1859489 22529606 ~ 22530708 (-) True G52226
TU70611 other upstream 323372 24750440 ~ 24753087 (-) False phactr3a
TU70950 other upstream 1520313 25947381 ~ 25972172 (-) False acot7
TU71098 other upstream 1785925 26212993 ~ 26214882 (-) True G53196
XR_005639354.1 other upstream 2219746 26646814 ~ 26658321 (-) False dcp1a
XR_005639355.1 other upstream 2219746 26646814 ~ 26658321 (-) False dcp1a

Expression Profile