RNA id: XM_039801003.1


Basic Information

Item Value
RNA id XM_039801003.1
length 2188
RNA type mRNA
GC content 0.44
exon number 5
gene id tardbpa
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24008001 ~ 24021872 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAAGATAACAAAAGGAAGATGGAAGAAATAGACGCTGCCTCAgctgtaaaagtaaaaaggggCTTTCAGAAGACGTCAGATCTCATTGTCCTCGGGCTGCCATGGAAAACAACAGAACAAGACTTGAAAGATTATTTCACTACCTTTGGGGAGGTCATTATGGTGCAGGTCAAGAGAGACGTAAAGACTGGCAACTCGAAAGGATTTGGGTTTGTCCGGTTCACTGAGTATGAGACACAAACCAAAGTGATTGCTCAGAGACACATGATTGATGGACGATGGTGTGACTGCAAACTTCCCAACTCAAAGGCGTTTCCTGATGAGCCCATGCGGAGCCGTAAAATCTTTGTTGGCCGCTGTACAGAGGACATGACAACCGACGAACTGAGGCAGTACTTCATGCAGTATGGCGAAGTCACTGATGTCTTCATCCCCAAACCGTTCCGGGCATTTGCATTTGTCACATTTGCTGATGACCAGGTTGCCCAAGCCCTGTGTGGAGAGGACTTGATCATCAAGGGCATCAGCGTGCACATCTCCAATGCTGAGCCCAAACACAATAATAGTAGGCAAATGATGGATCGAGGGCGGTTTGGGGCTGGTGGGTTCAGTCAGGGCTATGGCAGTAATCGTGGTGGGCTAGGCAGTGGTAGTGGGGGGGTTAACTTTGGGGCTCTCGGCCTTAACCCGGCCATGGTGGCTGCTGCccaggcagcgctgcagagCAGTTGGGGAATGATGGGCATGCTGGCAAACCAGCAGGGTATGACCACAACGGCAGGCACTCCCACTACGACCCGAGACCCGACCTATAGCTCCTCCAGCACCACCAGTTACAGCAGCCCCAGTTCAGCTAGCCTCGGTTGGGCTGCAGGCACTAACGCCGCCTCCAGCAGTGGCTTCACCTCCGGCTTTGGCACCTCTATGGAGTCTAAGCCTTCTAGTTGGGGAGTGTAGATAGTTTtgagttcagcttttctgtTGCTATTAGGCTAATCTGGTAAGTATACCTACAGCTGGGAACTGCTTATATCTTATGTTcctattattaaaaatatactgcctttttattttgttaaagagAAAAATTTATACTTGCGTGTGACTGATTATGTAGTCATGCATTGAATGGGTGAAAAGTTTAGTTAGTGAAAACTGCTACGCTcaatttttttggtttttgaaaaaatattaaacaGAGATGAGCATGCAAGATAAATATTTATAAACATGCACGAGTATCTCGAGAGCCCCCTCATCCCCTTGTAAAATGGGCTTGATATGATTATATGTCTGTAAGCAGTTGATTgcatctttttgtttgtttttgtttgacgTCTTTTGGAAACGCCTTCATGAAAGTCTCTTCTGCAGTTCACCAACTCTTTCCCAATTTCCCGGGAGGAAGCGCCTCATTGGCAGCAATGTTCGACAGATCTCAGTATCAATTCCCCTCTTCCCATGTGTAAATGCTTTGCCATCAAAGAACACAGCTTCACTCTGCATATACTGTGTTAGACGGTGggtgttgtctttttttcctctcccctTTTTTATGGATATAGAAATCTTGTCTGCTCTTGTTGCTTTTCAAGATCAATGAGTGGGATTGGTGTTGGACCGAGTGAGAGTGAGCGAACGGGAGAGCAAAATGAAAGAAGTGTGAGATGGACTGTttgtgcagattttttttttttttttttttttttttttaaagagacatGCCTGCGAGAGTTGAGAAGAACCTGTGGCTTTGTGCGAGTGTGAGAGGAAGAAGCAAGTACGAGTGTGTCCCTAATGACCATCACAAGGACATTCTCTGCTTTTTCTCATTGTTTCTATCTTTTAATTCTTTAAACACACAGTGAAATGTCAAGTGCTATGAATATTTGTACCTTTTTCGTAGCTTTCTCTTGCTGTCTGATTTGATGTGAATGCTTTGTCTGGTTgtgtgatttaatttttttctccttGTTAGCACCCTCTCTGTGTGAAAATGTGACTTTGTGCTGGTGGAGTCTGTGTGGGCAAAAACACTGAAAGTGTGTTGAAGTTTGAGGTTGATGTGGTGAATGTTTGACAAGATCCCATTGAAAGTTTGTGTTTGAAGTGGTTACGAATGCATTTTCTATGTTTTGTGACTCAAAGGGAAGTctgaaataaaactgaatttgactAGGTATAATA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70360 lncRNA downstream 5978 23980748 ~ 24002023 (-) True G52681
TU70357 lncRNA downstream 6369 23995628 ~ 24001632 (-) True G52679
TU70359 lncRNA downstream 10282 23996604 ~ 23997719 (-) True G52680
TU70354 lncRNA downstream 32481 23974843 ~ 23975520 (-) True G52677
TU70341 lncRNA downstream 84332 23923208 ~ 23923669 (-) True G52664
TU70390 lncRNA upstream 86612 24108484 ~ 24108714 (-) True G52706
TU70422 lncRNA upstream 303148 24325020 ~ 24326976 (-) True G52732
TU70443 lncRNA upstream 345277 24367149 ~ 24367469 (-) True G52746
TU70480 lncRNA upstream 364031 24385903 ~ 24386621 (-) True G52765
TU70500 lncRNA upstream 444162 24466034 ~ 24468019 (-) True G52776
XM_039799309.1 mRNA downstream 113817 23891799 ~ 23894184 (-) False lzic
XM_039799308.1 mRNA downstream 113817 23891799 ~ 23894184 (-) True lzic
XM_039799242.1 mRNA downstream 305572 23700576 ~ 23702429 (-) False her9
XM_039799240.1 mRNA downstream 305572 23700576 ~ 23702429 (-) True her9
XM_039801937.1 mRNA downstream 367603 23629441 ~ 23640398 (-) True perm1
XM_039801311.1 mRNA upstream 244302 24266174 ~ 24319003 (-) True pex14
XM_039801312.1 mRNA upstream 244782 24266654 ~ 24319003 (-) False pex14
XM_039799377.1 mRNA upstream 313444 24335316 ~ 24339439 (-) True masp2
XM_039801166.1 mRNA upstream 334916 24356788 ~ 24358011 (-) True cort
XM_039801849.1 mRNA upstream 339080 24360952 ~ 24365511 (-) True srm
TU70089 other downstream 688317 23308500 ~ 23319684 (-) True G52501
XR_005639228.1 other downstream 789101 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other downstream 789101 23214098 ~ 23218900 (-) False si:ch211-150o23.3
TU69738 other downstream 1477293 22529606 ~ 22530708 (-) True G52226
XR_005639375.1 other downstream 1778580 22223149 ~ 22229421 (-) False LOC120559880
TU70430 other upstream 313277 24335149 ~ 24339456 (-) False masp2
TU70611 other upstream 728568 24750440 ~ 24753087 (-) False phactr3a
TU70950 other upstream 1925509 25947381 ~ 25972172 (-) False acot7
TU71098 other upstream 2191121 26212993 ~ 26214882 (-) True G53196
XR_005639354.1 other upstream 2624942 26646814 ~ 26658321 (-) False dcp1a

Expression Profile