RNA id: XM_039801733.1


Basic Information

Item Value
RNA id XM_039801733.1
length 4184
RNA type mRNA
GC content 0.48
exon number 3
gene id fignl2
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22279402 ~ 22295441 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTATGCAGCTTCAAAAGTGTAAGGTCTCCTAAGAATACAGTCTTTATTGCCCCAGTGCACAGAGCAATGggctGTTCTGTTGTCAGTGCGAGCTCATGCTAGTGATGGACAACAGCTGGACGGACGCTAACCTTAGCTGGCATTCACACAACAGCATCCCTCCTTACTGAGACCAGCTCCACAGAATGCTGAGTCCTATTGTCCCCTACAGCCTGTTAAAGATGCACTGGAACCCAGAGCATGCCCAGCCTCTCAGCCAGTGGCCTGAGCAGCACCTTGATGTCTCCTCTACCACCTCCTCTCCGGCCCACAAGTCGGAATTCTACCCTGGCCGCGGTCGCAGCGGCTCCAACTACGCCTGGGCCAATGATGACATCTCTGCTCTCACAGCTTCCAACCTTTTGAAGCGTTATGCTGAGAAGTATTCTGGCCTGCTGGACTCACCGTATGACCGGCCACCTACTGTAGGCACCTACCCAGAGCCAGGGGCCTTTGGGGGCCTCAATGTCCCGAAGACTGAGCTGGAGCCCTGGCCACTGACACACAGCACTGATGCCTCCTATTCCCTTGTGCCCCCTGGAGGCCATGACAGCCTCTCAGGTTCCAAAACTGTGGCCACATCTGCAGGTCCTCCAGGGGTTAGTAGTGTTTCAGTGGTGAACAGTAACCTCTCAGACTCGGGCTACAGTGGCAGCAGCTCCTGTAGTGGCTCCAGCGAGTACCCCTCTAGCTACAATGGCACCTATCTTTCCTCAGGGTACTGTCCCCAACCCAATGCAGCACTTCCCCCTGCCTCCCTCCACACTCTCCAATCCACCCCTACCCTAGTGCCCAGCTATAGCCCTACCACACCGGTCTATAACTACCCCCCTAGCACGTATCCTCCCCATACCAGCCTTGCCCCCAGCTACAGCCACCCCTCTGCAACTTACCTGCCCTCAGGTCTACAAGCCCCTACTCCCGTTCCCTCAAGGCCCACAGTGGTAGGAGGCAGTTATAGTTACCAGAGCACCAACCTTGGGACATCTGAGTCTGGTGggacattaaaaagaaaagcatttgaGATGAGTGTAGAAGAGGATGAGAGCGGGGACAGGTCTCGTTACAGGAAATATAGCTATGACCCCTTAAAGGCTGGGGGGAACTCACCCTACAGTGTGAATGACAAAACAGAGTGCCGGGGAAACGGCTTCAGTAGTTCAGGCAGCACAGACCCTCAAACCTTTAAGCCCAATAAGCCCTCCTCCCAGCCCCTGGTGTCTCCTCAGTATGGGGCAGCTGGGGAGTACAGCCCTCCAGCGGGCATGACAGGGGAGAATGGCGGGGCAGAGCAGGGCTTcatccaacagcagcagcaccgctCCCAGGcccacaaacgctctccattgTGTGCTCCAACTGTTGAAACTATGAAGAGCCCAGACCCCCGACTGTTGGACCTTGTTAATGGGGAGTTACTGGACTGCAGCCCAGCACTGGGCTGGGGAGAGCTGGCCGGGCTCACCCATGTCAAGGCTGCCCTGGAGGAGGACCTGCTGTGGCCCGTGTTGAGGCCCAGTCCAGTGATGCGACCACCAAGAACCGTCCTGCTGTTTGGTCCCCGGGGAGGGGGTAAGACGACGTTGACCCGTTCTTTGGCTTCACAGTTGGGGGCTTCCTTCTATCGGTTGAGTGGAGCCATGCTGGCCTCTAAAGGGAAGGCTGAGGCAGAGCACATTCTGGGGTCTCTTTTGCAGGTGGCGGGGGCACGGCAGCCCTCTGTGGTGCTGCTCAGCCAGGTGGAGGCCATGGAAGAGGAGGGGCTGAGGCAGAGTCTGCTGACCACCACCCTGGAGAAAGCCCAGGTGGGGACTACAGGTCTGGTGATTCTTGTATGTGCCACTGGAAGGCCAGATCTGCTGCAAGATGCAGTCCATCGGAGCTTTGCCAAGCGATATCACGTTGGCCTGCCAGATGTGGGTATGCGCAGGCAGGTGCTGCTGCAGGCGCTGTCGCCCCAGGGTTGCAGCCTGAGCGAAAGGGAGCTGAGCGCTGTGCTGCAGCGCACAGAGGGCTTCTCAGTGtgggagctgctgcagctcagcCAGCAGGCACTCTCCTCAGCATCCTCTCCCACTGGGGCCATGCATGGCCACCCCACATCCTCCAAACCCCCAGCCTTCACAGACTTTGAGAATGCCTTCTGCAAGGTGCGCCCACACACCACCACAAAAGAACTGGATACTTGTATAGAGTGGAGCAAGATGTATAACCACTGAGAAAGCAACAAGTCACTGTAATCGGACTGCATTATGACCCTGTCTTCGCTTTGACATGGAAAGCCATGggaatgttttgttgttttgtaattacagatTATGCAGCCAAAAGAGCCAGTGAAGCTCAATGATTGTTTTCGTATGAATAGccgcaatattttatttttcccaaagaaaagaaagatgaaTAGGCCTTGTTGAGTGGGGTAGTGTATTAGTCTTTTGGCCAACAGGAAAATCAGATTATATTCTATTTGGAAACTCTCCGAGATCCTGATTAGCCTTGGTCCGGGACAAAATCAATTAGTAGTTGCTAGGTGACGTGGTCCAAGATTATGGATAATCAGGGTTTGGCAAAATCCCCCCTTTGACTGCTACTCTCAGGATCCTATTTATTGCCAGTCCACTTCCATGTTATCCTAATGTTGATTTAGTCATTGGACTGTCACTAATTATTCAGTGCGAATGGCTTGGGATCATTTTAGCAGACCACAGTTTTTAGCAGACCACAGTTTTTGACCAAAAAGGTGTCAAACCAAATGCTTAATCAGCAGTGTTTCTATATTTCTCAAAACAGACTTCAAAATCAGGTCATCTTTCTTGATAGCTTCTCACCAAATCAAAAGTTAGTCCTTATTAttccaaaaaagaaagtaaaatcaAAAGACTTTTATTAAATCCGTGCATGCTGCTGTCCTTCCCAGGAGTTATGTTTTTCAAGTAAAAGCTTGCAGTTACACTCAACATGTTTGGTTGTAGTAATTACTTTATTACTGTTGGTTTGTTGTCCTTAAATTCCACATACATTTGTTCTCGATCTCACATTCCTCATCGTCTGCAGTTTTCCTGAGAATCTCATTTACAAAACTAAATGTACCCACCTGCACACCCACCGTCTCCTACAGTCTGTTTTCTCTTTCATTTACTCCTTTTGTTTTCTTAGTATTTAGTCTTGTTTGAAATGCTCAGGAAGAATTTCTTTACCTCAGAAATATGAAATTAAGAATGTATGTAATCTTATGGTCTTAGTAGAGAGTGGCGCGGAGCGAGAGAAAGGAGCGAGGAGAAACCTGACAGTCTTGTAATACCCACTTCGGTTGGGCTTTTACCTCGTGAGAGAAACTTGAATATGCTACAAAGAGTAACATTGAATGTAATTCAGGTATTTCAAAGGATATTTGATGCCATAAATccatgtattattatatatgaatatataaatctgttttctgttcttttaccctttatttttattgtagTTTATGGTGGAGTGATGATTGTCTTCAAGAAATGCTATGTAGAATACAGAAAATATTCCTTTTTTTGTTGGACAAACTGCTTACAAATCCCCGTGTTATTTAGTGTTTACATATCCTGTATATGCATGTCTGCTGTTTATAGTTTTATGGCtgcaaaatataatttaaaaatgtaaatacaacacacacaatcgTACATGTGTACTCACAGTCAACATCTGAGCACAAAATACCttccaaaaagaaaacaaacaaaaacacagatgcaAAAAATAAAGCTTAAAGATGAAGTTGTTATATGTAGCTTTCAGCTAATCCCAAAGTCTGAGAATTCACAGTTTATGTGTACATATTGTGGATGAACCCAACATGTAGGCAATCCAGACAATTCTCTCCTTTTCCACCAGtcctacatttctgttttaacaAGCTGGAAAAACCCGGTCACTGGACTGCTGGTACAGAGGTTGTTGTATTAGACTGTTGCCATGGTCCTGAGGAGGTATACACAGAATGATGTAATATTTCCCACTgccctttcctctctctgtctctccctccctccctgcctcatcattatttttccttttctctctccccagTGCAATCTCATTAGATTGGATTGCCCCTTGGCCACAAGCCCCAGTGGTCATGTGACATTGTATC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69593 lncRNA downstream 13349 22243811 ~ 22266053 (-) True G52124
TU69597 lncRNA downstream 30682 22248137 ~ 22248720 (-) True G52128
TU69596 lncRNA downstream 31319 22247110 ~ 22248083 (-) True G52127
TU69595 lncRNA downstream 36074 22242523 ~ 22243328 (-) True G52126
XR_005639343.1 lncRNA downstream 198946 22079899 ~ 22080456 (-) True LOC120559667
TU69607 lncRNA upstream 8917 22303165 ~ 22303794 (-) True G52135
TU69609 lncRNA upstream 33407 22327655 ~ 22327878 (-) True G52137
TU69697 lncRNA upstream 172823 22467071 ~ 22467531 (-) True G52197
TU69746 lncRNA upstream 241304 22535552 ~ 22538147 (-) True G52231
TU69748 lncRNA upstream 241304 22535552 ~ 22538147 (-) False G52231
XM_039800874.1 mRNA downstream 4922 22251254 ~ 22274480 (-) True stat6
XM_039800875.1 mRNA downstream 4923 22251254 ~ 22274479 (-) False stat6
XM_039801260.1 mRNA downstream 42194 22231147 ~ 22237208 (-) False dtx3
XM_039799532.1 mRNA upstream 47177 22341425 ~ 22388204 (-) True scn8aa
XM_039800166.1 mRNA upstream 103622 22397870 ~ 22441829 (-) True dip2ba
XM_039800169.1 mRNA upstream 105973 22400221 ~ 22441829 (-) False dip2ba
XM_039800167.1 mRNA upstream 105973 22400221 ~ 22441829 (-) False dip2ba
XM_039800168.1 mRNA upstream 105973 22400221 ~ 22441655 (-) False dip2ba
XR_005639375.1 other downstream 49981 22223149 ~ 22229421 (-) False LOC120559880
XR_005639356.1 other downstream 264359 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639338.1 other downstream 1080359 21167971 ~ 21199043 (-) True fmnl3
XR_005639107.1 other downstream 1326884 20920699 ~ 20952518 (-) False LOC120558386
TU69738 other upstream 235358 22529606 ~ 22530708 (-) True G52226
XR_005639228.1 other upstream 919850 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other upstream 919850 23214098 ~ 23218900 (-) False si:ch211-150o23.3
TU70089 other upstream 1014252 23308500 ~ 23319684 (-) True G52501
TU70430 other upstream 2040901 24335149 ~ 24339456 (-) False masp2

Expression Profile