RNA id: TU80313


Basic Information

Item Value
RNA id TU80313
length 1364
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G59804
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7498489 ~ 7504014 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCTCCAAATTTCAAGTCAAGCGAGGCCTAGCCTCTTTCTCTGGAATTGTGCATTTACTGTACATTCAACAATCACACCTTTGTACAGAGCCTATTTATACAGCTGGTCACCAAGAAGTTTAGACTGTCAACAACATATGGCCTCTCCTTTATTTGTCTTGGGTGCACAATGTCACTGCACATAGGTTgtctaaataaaaacaaaatttgaTAACAACCTACAAAAAGATATTTAACATGTCCTACTGACATTCATATACAGATGAAATCCTCAAGATAAACGTAGAAATAGAAATCAAtgaaatcaaaaaggaaaataatgtaaaaagctATGACATGAACGtagacatacaaaaaaaacaaacaaaaaaaaaacaagtgaacAGTCTTACAGAACACAGTCCTTACACACAGTAGGCAATCGTACAAAAAGGGAAGTGAATTCTTCATTAACAAATTTAGCCAGGTGTGGACAGGAAGGGACAACTTTGTTCTGGGCTTTTAGCATTTATCTTATTCAGCCACTTTAGTCAGTTACCTTTAAATCTAAAATTCACGAAATAAAGCTTTAGCAAGTTCaagccaagttttttttttccttttcttcttacAATCATTTTTGGAACAGACTAAAGTTTTGAACCATTATGGGCTAGAAttcaagtgacaaaaacatttttggaaCAGACCCCTAGGATGTGATGTGCACAGTGAGCAGTTGTGACACACTGAAACATGATTTACAACAAAATTAAAGTTCAGAttgtcctgtgtttgtgtgtgtgtctgtgtgtgtgtgggaggggacTTATTTCTCAATCTCCTCAAGAGGAGTGAATTGAGGGGCTGtagggttggggggggggggttgggtgCACAGCTCCCTGGTGTGGTTCTCGCTGCACCGGTCTTGCACGGGGACTCTGGTGGTGCTGGAGTAGAAGGAGGCGGTGAATGGGGAGCCCTGTGCACACCGTGCTACTTACTTGAAGCCCTGCTGGTTCCAGGCCTGGCCGTAGACGCCGTAGGTGGGGACCTGCCACCCATTCGGGACGTACTGGCTGATCTGGGGCCCGTTGCCGTACCACTGGCCCCACTGGCCATAGGGCTGGGCTGCCGCAGGGAAGCTCATCTTGCTCTGCTGGGGTATAGGCATCTGCTGCATCGGGTTCATCATGTCCGGGGTCTCTTTTCCCCAGTAGCATTTGACTATGTGGCCCTCTATTGAGGTGCCATTCACTGACACAATGGCATGGGCTGCTGACTCATGGGAGTTAAACCTGGACAAAGACAGGGGGGATGTGTGGGGTGAGTAGAGGATTCATATATTTATTAGAAAGACTACAGTATGTAGTTACTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80310 lncRNA upstream 4285 7493888 ~ 7494204 (+) True G59803
TU80173 lncRNA upstream 235146 7179493 ~ 7263343 (+) False G59696
TU80171 lncRNA upstream 315052 7179493 ~ 7183437 (+) True G59696
TU80169 lncRNA upstream 391635 7082014 ~ 7106854 (+) False G59694
TU80344 lncRNA downstream 73949 7574730 ~ 7576084 (+) False LOC120560567
TU80345 lncRNA downstream 73949 7574730 ~ 7576127 (+) False LOC120560567
TU80351 lncRNA downstream 87014 7587795 ~ 7588630 (+) True G59833
TU80343 lncRNA downstream 129725 7630506 ~ 7631241 (+) True G59826
TU80363 lncRNA downstream 134814 7635595 ~ 7636054 (+) True G59837
XM_039802164.1 mRNA upstream 355469 7140197 ~ 7143020 (+) True bmp10
XM_039804327.1 mRNA upstream 361638 7108813 ~ 7136851 (+) False arhgap25
XM_039804325.1 mRNA upstream 361638 7113668 ~ 7136851 (+) True arhgap25
XM_039804328.1 mRNA upstream 362123 7108813 ~ 7136366 (+) False arhgap25
XM_039803500.1 mRNA upstream 396595 7075326 ~ 7101894 (+) True cds2
XM_039803194.1 mRNA downstream 11258 7512039 ~ 7519772 (+) True rchy1
XM_039803201.1 mRNA downstream 49833 7550614 ~ 7572968 (+) True LOC120560565
XM_039803202.1 mRNA downstream 49833 7550614 ~ 7572968 (+) False LOC120560565
XM_039803210.1 mRNA downstream 73944 7574725 ~ 7576136 (+) True LOC120560567
XM_039803203.1 mRNA downstream 75454 7576235 ~ 7597214 (+) True si:ch211-12e13.1
TU80145 other upstream 521687 6969133 ~ 6976802 (+) False add2
TU79987 other upstream 821005 6674917 ~ 6677484 (+) False kat6a
TU79733 other upstream 2000735 5495155 ~ 5497754 (+) True G59347
TU79728 other upstream 2044995 5448136 ~ 5453494 (+) False golga3
XR_005639484.1 other downstream 99312 7600093 ~ 7623699 (+) False susd1
TU80342 other downstream 125026 7625807 ~ 7629074 (+) False zbtb26
XR_005639603.1 other downstream 183864 7684645 ~ 7684763 (+) True LOC120561481
XR_005639604.1 other downstream 189893 7690674 ~ 7690792 (+) True LOC120561492
XR_005639610.1 other downstream 192310 7693091 ~ 7693209 (+) True LOC120561498

Expression Profile