RNA id: TU80345


Basic Information

Item Value
RNA id TU80345
length 683
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC120560567
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7574725 ~ 7576136 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTCCTCAGCCACCGTAGGCTACGTCAGAAGTAAATACTGACTGCTAGCCTACAGCTAGCTACCTGTGAAAACAACATGGCTTTCACTTTGTACTCTCTTATTCAAGCAGCAATTCTGTGCGTCAATGCTGTCGCTGTATTACACGAAGAAAGATTTCTGAGTAAAATTGGCTGGGGAGTAGACCAAACTGTCGGAGGTTTTGGTGATGAGCCAGGCATCAAAGTGCAGCTAATGAACCTTGTCCGCTCTGTGAGGACAGTGATGAGAGTGCCGTTAATCGCGGTGAACGCAGTCTGTATAGTGCTGCTGCTTCTGTTTGGATgaagagtgagtgagtgaagaTGGGACAAGCCAGACTGCTGTCAGGAGATCATCTCAGGAACTCTTCTGCAGAAACATTTGATCACTTTGGCTCACAGGACATCTCCTGTCCGCCTGAATATGAATGTTATCATTTAATATGCCACATCAATAATTTGTTAGGGCTGTTTTATACAGCTCAGTGATTTACAATAAGTACATGCAGCTAGAATGCATCCTATTAGTTTGAATAGTACAATAAAATGCCGAATAGTTAACACTTAATTTGCAGAGTGgaaaatgttgtgatttatACACTGAAAACACGTAAATTAGTAAGTCTTGTATACGTGGTATGGctgttgaaataataataaattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80312 lncRNA upstream 70716 7498489 ~ 7504014 (+) True G59804
TU80313 lncRNA upstream 73949 7498489 ~ 7500781 (+) False G59804
TU80310 lncRNA upstream 80526 7493888 ~ 7494204 (+) True G59803
TU80173 lncRNA upstream 311387 7179493 ~ 7263343 (+) False G59696
TU80171 lncRNA upstream 391293 7179493 ~ 7183437 (+) True G59696
TU80351 lncRNA downstream 11668 7587795 ~ 7588630 (+) True G59833
TU80343 lncRNA downstream 54379 7630506 ~ 7631241 (+) True G59826
TU80363 lncRNA downstream 59468 7635595 ~ 7636054 (+) True G59837
TU80365 lncRNA downstream 70578 7646705 ~ 7647149 (+) True G59839
TU80492 lncRNA downstream 298687 7874814 ~ 7878371 (+) False atp2a2a
XM_039803201.1 mRNA upstream 1762 7550614 ~ 7572968 (+) True LOC120560565
XM_039803202.1 mRNA upstream 1762 7550614 ~ 7572968 (+) False LOC120560565
XM_039803194.1 mRNA upstream 54958 7512039 ~ 7519772 (+) True rchy1
XM_039802164.1 mRNA upstream 431710 7140197 ~ 7143020 (+) True bmp10
XM_039804325.1 mRNA upstream 437879 7113668 ~ 7136851 (+) True arhgap25
XM_039803203.1 mRNA downstream 108 7576235 ~ 7597214 (+) True si:ch211-12e13.1
XM_039803204.1 mRNA downstream 108 7576235 ~ 7597214 (+) False si:ch211-12e13.1
XM_039803205.1 mRNA downstream 108 7576235 ~ 7597214 (+) False si:ch211-12e13.1
XM_039803207.1 mRNA downstream 108 7576235 ~ 7585723 (+) False si:ch211-12e13.1
XM_039803206.1 mRNA downstream 108 7576235 ~ 7582535 (+) False si:ch211-12e13.1
TU80145 other upstream 597928 6969133 ~ 6976802 (+) False add2
TU79987 other upstream 897246 6674917 ~ 6677484 (+) False kat6a
TU79733 other upstream 2076976 5495155 ~ 5497754 (+) True G59347
TU79728 other upstream 2121236 5448136 ~ 5453494 (+) False golga3
XR_005639484.1 other downstream 23966 7600093 ~ 7623699 (+) False susd1
TU80342 other downstream 49680 7625807 ~ 7629074 (+) False zbtb26
XR_005639603.1 other downstream 108518 7684645 ~ 7684763 (+) True LOC120561481
XR_005639604.1 other downstream 114547 7690674 ~ 7690792 (+) True LOC120561492
XR_005639610.1 other downstream 116964 7693091 ~ 7693209 (+) True LOC120561498

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1124984 True 788 lncRNA 0.40 3 NC_048575.1 49279403 ~ 49283794 (+)
bowfin (Amia calva) TU96516 False 1454 lncRNA 0.41 3 CM030129.1 10303195 ~ 10305242 (+)