RNA id: XR_005639603.1


Basic Information

Item Value
RNA id XR_005639603.1
length 119
RNA type rRNA
GC content 0.61
exon number 1
gene id LOC120561481
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7684645 ~ 7684763 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcttacggccataccaccctgaacacgcccgatctcgtccgatctcggaagctaagcagggtcgggccgggtcagtacttggatgggagaccgcctgggaatacccggtgctgtaagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80365 lncRNA upstream 37496 7646705 ~ 7647149 (+) True G59839
TU80363 lncRNA upstream 48591 7635595 ~ 7636054 (+) True G59837
TU80343 lncRNA upstream 53404 7630506 ~ 7631241 (+) True G59826
TU80351 lncRNA upstream 96015 7587795 ~ 7588630 (+) True G59833
TU80345 lncRNA upstream 108518 7574730 ~ 7576127 (+) False LOC120560567
TU80492 lncRNA downstream 190051 7874814 ~ 7878371 (+) False atp2a2a
TU80491 lncRNA downstream 192405 7877168 ~ 7878371 (+) False atp2a2a
TU80483 lncRNA downstream 236014 7920777 ~ 7924556 (+) True G59931
TU80665 lncRNA downstream 542129 8226892 ~ 8227173 (+) True G60082
TU80669 lncRNA downstream 547241 8232004 ~ 8236195 (+) False G60084
XM_039804516.1 mRNA upstream 21516 7658172 ~ 7663129 (+) True gucd1
XM_039803853.1 mRNA upstream 26993 7649773 ~ 7657652 (+) True LOC120560946
XM_039803854.1 mRNA upstream 26993 7649773 ~ 7657652 (+) False LOC120560946
XM_039802907.1 mRNA upstream 45236 7632692 ~ 7639409 (+) True LOC120560421
XM_039802908.1 mRNA upstream 45236 7632692 ~ 7639409 (+) False LOC120560421
XM_039803852.1 mRNA downstream 136542 7821305 ~ 7845805 (+) True ift81
XM_039803270.1 mRNA downstream 162908 7847671 ~ 7877124 (+) True atp2a2a
XM_039803271.1 mRNA downstream 162922 7847685 ~ 7877124 (+) False atp2a2a
XM_039803275.1 mRNA downstream 203915 7888678 ~ 7900524 (+) True LOC120560607
XM_039803274.1 mRNA downstream 213800 7898563 ~ 7904594 (+) True LOC120560606
TU80342 other upstream 55571 7625807 ~ 7629074 (+) False zbtb26
XR_005639484.1 other upstream 60946 7600093 ~ 7623699 (+) False susd1
TU80145 other upstream 707843 6969133 ~ 6976802 (+) False add2
TU79987 other upstream 1007161 6674917 ~ 6677484 (+) False kat6a
TU79733 other upstream 2186891 5495155 ~ 5497754 (+) True G59347
XR_005639604.1 other downstream 5911 7690674 ~ 7690792 (+) True LOC120561492
XR_005639610.1 other downstream 8328 7693091 ~ 7693209 (+) True LOC120561498
XR_005639608.1 other downstream 13164 7697927 ~ 7698045 (+) True LOC120561496
XR_005639609.1 other downstream 14370 7699133 ~ 7699251 (+) True LOC120561497
TU80548 other downstream 343429 8028192 ~ 8035361 (+) False cux2b

Expression Profile