RNA id: XM_039803271.1


Basic Information

Item Value
RNA id XM_039803271.1
length 4142
RNA type mRNA
GC content 0.52
exon number 21
gene id atp2a2a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7847671 ~ 7878371 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGATGAGGGGCAGCAGTGAGGCACTTTGATAAAACCAGACTGTCAGCACTGTGTGGAGCCACAGACAGCTGCGCAACGGTGAGGTACAGCACGGCAGCACAGAGAACTGGACCGGGTGAATGCAGTCCTTAACACAGGACACTGCTGCAGACCTTTCTTTCCCCACCTTTTTCGGAGATAAGAGGACGCTCAAAATAATCTTCACCCAGACAGGGAAGAGGAATTTGGCTCACTGCATTTCTTTTACGTAATTCGCGTTAAGAAAATCTTAAGAGGGCAGGGGGACACGTTAAACCGCGGTTAATAGCTAACAGCTATCCGAGTGTGAATGCACATCTCTCAGTTAGCAAACTCCTTATACATTTGAAagtattttacagttttaaatAGCCAAAAGTTACCATACGGCAGTATTGTTTTGTAAAGCTGTGTGGGAAGGAGCCGCCTGTCCGCCATGGAGAACGCTCACACGAAGAGTGTCGAAGAAGTTTACAGTCATTTCTGCGTCAATGAAAGCACAGGACTTTCCCTGGACGAGGTGAAACGACAGAAGGAGAAATGGGGCCTAAACGAGTTACCAGCAGAGATAGGGAAGTCTTTGTGGGAGCTTGTCCTTGAACAATTTGAAGATTTACTTGTTCGAATTCTTCTGCTGGCCGCATGCATATCTTTTGTCCTGGCCTGGtttgaggagggagaggaaactATCACAGCCTTTGTGGAGCCTTTTGTCATTTTACTCATTCTTATAGCCAATGCCATCGTCGGTGTGTGGCAGGAACGCAATGCTGAGGATGCCATTGAGGCACTCAAGGAGTATGAGCCTGAGATGGGGAAAGTGTACCGGCAAGACAGGAAAACTGTGCAGAGGATCAAGGCCAGAGACCTTGTGCCGGGTGACATCGTGGAGGTTGCTGTTGGCGACAAGGTGCCTGCTGACATCCGTATCTGTTCAATCAAATCAACAACTCTGAGGGTAGACCAGTCCATTCTGACCGGTGAATCTATCTCGGTCATCAAACATACCGACCCTGTGCCCGACCCTCGTGCTGTCAATCAGGACAAGAAGAACATGCTCTTCTCTGGTACTAACATAGCATCTGGAAAGGCCGTGGGTGTGGTCGTGGCCTCGGGTGTTAACACAGAGATCGGTAAGATCCGTGACGAGATGGCGGCCACGGAGCAGGAGAAGACGCCCCTGCAGCAGAAGCTGGATGAGTTTGGCGAGCAGCTGTCAAAGGTCATCTCCCTCATCTGCATCGCCGTGTGGATCATCAACATCGGACACTTTAACGACCCCGTCCACGGAGGCTCCTGGATCCGCGGCGCCGTCTACTACTTCAAGATCGCCGTGGCACTGGCGGTGGCCGCCATACCTGAGGGTCTTCCGGCCGTCATCACCACCTGCCTGGCCCTGGGCACCCGCCGCATGGCCAAAAAGAACGCCATCGTCCGCAGCCTGCCATCCGTGGAGACCTTGGGCTGCACCTCTGTCATCTGCTCTGACAAGACGGGAACCCTGACCACCAACCAGATGTCTGTGTGCAGAATGTTCGTTATCAACAAAGCTGAAGGTGACAGCTGCGCTCTGTCAGAGTTCACCATCACAGGTTCTACCTACGCACCTGAGGGAGAAGTGTACCAGGATGGTAAACCAGTGAAAACCTCCCAGCATGATGCCCTGGTTGAACTGGCTACAATCTGTGCCCTGTGTAACGACTCCTCTCTGGACTTCAACGAGGTGAAGGGTGTGTACGAGAAGGTGGGTGAGGCCACAGAGACCGCGCTGACCTGTTTGGTGGAGAAGATGAACGTTTTCGACACCGAAGTCCACAACCTGTCCAAGATTGACCGAGCTAATGCCTGCAACTCCGTGATCAAGCAGCTGATGAAGAAGGAGGTCACCCTGGAGTTCTCCAGAGACAGGAAGTCCATGTCCGTCTACTGCACCCCCAACAAGTCTCGTTCTTCCATGGGCAAGATGTTTGTCAAGGGGGCCCCAGAGGGAGTTATTGAGAGGTGCACCCACGTCAGAGTTGGCAACAGCAAAGTTCCCTTAAGCAAAGGAATCAAGGAAAAGATCATGTCTGTGATCCGTGAGTACGGGACAGGTCGTGACACCCTTAGGTGCCTGGCTCTTGCCACACGAGACAGCCCGCCCAAAATGGAGGACATGATTCTGTCAGACCCTCTCAAATTCGCGGCGTACgagTCCGACCTGACCTTCGTCGGCTGTGTCGGCATGCTGGACCCTCCCAGACAGGAGGTGGCCGCCTCCATCAAGCTGTGCCGCCAAGCCGGCATCCGTGTCATCATGATCACAGGGGATAACAAGGGCACAGCTGTGGCAATCTGCCGGCGCATTGGCATCCTGAGCGAGGAGGATGATGTCGAGCAAATGGCCTTCACCGGGCGGGAGTTTGACGAACTGTCGCCCGCTGCTCAGCGTGATGCTGTGACTAACGCTCGCTGTTTTGCCCGCGTCGAGCCTTCCCATAAGTCCAAGATTGTTGAGATCCTGCAAGGATTTGACGAGATCACTGCTATGACAGGTGATGGAGTGAATGATGCCCCTGCCTTGAAGAAGGCAGAGATTGGCATCTCCATGGGCTCTGGCACTGCCGTGGCCAAGTCAGCCTCTGAGATGGTCCTCGCCGACGACAACTTTTCTTCCATCGTGGCCGCCGTTGAAGAAGGCAGAGCCATCTACAATAACATGAAGCAGTTCATCAGATACCTTATCTCCTCCAACGTGGGGGAGGTCGTCTGCATCTTCCTTACTGCGGCGCTGGGCTTCCCCGAGGCTCTGATACCTGTTCAGCTGCTCTGGGTCAACCTGGTGACTGATGGCCTCCCTGCCACCGCCCTGGGCTTCAACCCCCCAGACCTGGACATAATGGAGAAGCCTCCTCGTAATGCTAAGGAGCCCCTCATCTCTGGCTGGCTCTTCTTCAGATACCTGGCCATTGGATGCTACGTGGGTGCAGCCACAGTGGGAGCTGCTGCCTGGTGGTTTACTGTCTCTGACGATGGACCTCAACTCACCCTGTACCAGCTGAGCCACTTCCTCCAGTGCGCCCCTGACAACCCAGACTTTGACGGCCTGGACTGCCACGTGTTTGAGTCGCCCTACCCAATGACCATGGCCCTGTCTGTGCTCGTCACCATTGAGATGTGCAATGCTCTCAACAGTCTGTCGGAGAACCAGTCTCTTCTGCGGATGCCACCCTGGGAGAACATTTGGCTCCTGGGGGCCATCTGCCTCTCCATGTCCCTCCACTTCCTCATCCTCTACGTGGAACCTCTGCCTGTCATCTTCCAGATCACCCCTCTGGATACGACCCAGTGGATGATGGTGCTGAAGATCTCCCTGCCCGTCATCCTGCTGGACGAGCTGCTGAAGTTTGTGGCCAGGAACTACTTGGACTTTGaaAAGGCCAAGTAAGCCCACCTCTTCTCTAAATTCCTAGCAGAGactttggttttgttttgtgttgtgcatgtgtgttttgggtAGCACATCCTACAAGAGCTGCATGTCGGTTCAAGAATATGAAGACAGAGGCTCAGAAAGTTCatacatccttttttttttttaatagaatggccattaataaataaatgtctgaaaactAGCCAATGCCACCCCATCAGTCCTTCCATCCTCTTGCATGAAGAGCCTTAGATTAGGATACAATTCTCATGCCATCTTTTTAGACAAAGGTCCTGGTACCGTGTACAGTCAATCGTACAATATTCCATGGTGCATGTCCGCTGAATCAGCCATCCGTTTTACCAGACTTGTGTAATAGACAATGTATAGTATTGGTAAATAGAATAGACATTCGTCAAATAGTTCATCTTTCCTAAGGAAATACTtttatggaatatttaaaaactaagcagcctttttattttttttttgctttgcacTGAGATGTGCAGATTTTGCCATAGCTGGGAAGGCGGACGTGGAGCGGTGCAGCGATGCTTCGGTTTAACCATGAGAACGGCAGGCAGTCCCTCcactggcatttttttttttgccaaactgCTGTACTGTATTTTGAGAGATGATTGTACGATGTGTCACATGAACTTTAGTTTCAGGTAAATAAAACTGTCCTACATGAAGAGTTTA

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0001947 heart looping biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80365 lncRNA upstream 200536 7646705 ~ 7647149 (+) True G59839
TU80363 lncRNA upstream 211631 7635595 ~ 7636054 (+) True G59837
TU80343 lncRNA upstream 216444 7630506 ~ 7631241 (+) True G59826
TU80351 lncRNA upstream 259055 7587795 ~ 7588630 (+) True G59833
TU80345 lncRNA upstream 271558 7574730 ~ 7576127 (+) False LOC120560567
TU80491 lncRNA downstream 44 7877168 ~ 7878371 (+) False atp2a2a
TU80483 lncRNA downstream 43653 7920777 ~ 7924556 (+) True G59931
TU80665 lncRNA downstream 349768 8226892 ~ 8227173 (+) True G60082
TU80669 lncRNA downstream 354880 8232004 ~ 8236195 (+) False G60084
TU80667 lncRNA downstream 358435 8235559 ~ 8236527 (+) False G60084
XM_039803852.1 mRNA upstream 1880 7821305 ~ 7845805 (+) True ift81
XM_039804516.1 mRNA upstream 184556 7658172 ~ 7663129 (+) True gucd1
XM_039803853.1 mRNA upstream 190033 7649773 ~ 7657652 (+) True LOC120560946
XM_039803854.1 mRNA upstream 190033 7649773 ~ 7657652 (+) False LOC120560946
XM_039802909.1 mRNA upstream 208555 7632692 ~ 7639130 (+) False LOC120560421
XM_039803275.1 mRNA downstream 11554 7888678 ~ 7900524 (+) True LOC120560607
XM_039803274.1 mRNA downstream 21439 7898563 ~ 7904594 (+) True LOC120560606
XM_039803276.1 mRNA downstream 27665 7904789 ~ 7913520 (+) True rad9b
XM_039803965.1 mRNA downstream 70128 7947252 ~ 8051340 (+) True cux2b
XM_039803966.1 mRNA downstream 71307 7948431 ~ 8051340 (+) False cux2b
XR_005639609.1 other upstream 148434 7699133 ~ 7699251 (+) True LOC120561497
XR_005639608.1 other upstream 149640 7697927 ~ 7698045 (+) True LOC120561496
XR_005639610.1 other upstream 154476 7693091 ~ 7693209 (+) True LOC120561498
XR_005639604.1 other upstream 156893 7690674 ~ 7690792 (+) True LOC120561492
XR_005639603.1 other upstream 162922 7684645 ~ 7684763 (+) True LOC120561481
TU80548 other downstream 151068 8028192 ~ 8035361 (+) False cux2b
XR_005639399.1 other downstream 554413 8431537 ~ 8434672 (+) False LOC120560007
XR_005639400.1 other downstream 554413 8431537 ~ 8434666 (+) True LOC120560007
unassigned_transcript_244 other downstream 567330 8444454 ~ 8444525 (+) True trnaw-cca_2
unassigned_transcript_245 other downstream 568494 8445618 ~ 8445689 (+) True trnaw-cca_3

Expression Profile