RNA id: XM_039803276.1


Basic Information

Item Value
RNA id XM_039803276.1
length 1601
RNA type mRNA
GC content 0.47
exon number 11
gene id rad9b
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7904789 ~ 7913520 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACATGATTATATTATGACTATtcaataacttttattttgagtTATACTCTTTTTAGTGTGACTATAAATCCTCTGTCGAGCCCTTTTGGCTAACTCTGGCGCATTAACAGAATGTTCATTTAACGTTATGTGCACTGCCACTGTTAAATAAACCATATATAGTAACTAGTATAGTAACTAACTAGGCCATTTTCTTCTAATGATTGAAATTATTTAATCTTACATTTTGCTCCAGAGGACCCTCTTCAAGCCAATTTAGCCTTTATATCGGCATCACTGTacattgtttttctctttttagctAAATTATCATGTAGCTAAAGTTAGCAATTGTAGTGGAGAAATCATCACCGCGCGCGCTGTTTGCTCCAGACTTGGTCACATCGGTCCTCATCAGCAAATATGAACTGTGTTTTGGAAGGAAGTGGTGTAAAAGcattTGGAAAGGCTATTCATGCCCTGTCACggattggagatgaactgtGGTTGGATCCCATGGTTAGAGGGCTGGCACTGAGATCAGTGAATTCTGCTCATTCTGCATATGCCTGCTTCCTCTTCTCGCCGCTGTTCTTCCAGCACTACAGCCTGGGATCAGCATCAGAGCAGAGCAGTGAAACAATCAAATGCAAACTGGCCATGAAGtctattCTACCTATTTTCCGCTGTTTGGCTTCGATTGAGCGTAATGTGGAACGATGTCAAATATCAATCGGCACTCCCGATGACCGAGTGATGATCCAGTTTTTCTGCAGGCATGGCATCACTAAGACCCACAACCTACGTTTTCAGGAAAGTGAGGCTCTGCAGGCAGTGTTTGCCTCGCACCTCTGCCCCAATGTGCTGAAAGCTCCTGCCAGgctTCTAGAGTATATGGTGTATGCTTTTCCAAgttGTGAAGATACTATTTTACTTGGATTTACTTCTGTCACAGATCACATGAAGACTATGTGCACTGAGATGTCCTTACACCCAGACGAGTTTGACTACTTTCAGATCGGAGTAGAGTCGGACATAACTTTCTGTCTGAAGGAGTTGAGGgGTTTACTGTCCTTTGCAGAGTCACATTGCCTTCCTGTGTCCGTCCACTTCGGTGCTGCAGGAAAGCCTGTGTGCTTCTCTGTGGAGGACATGGTCCTGGAGGCTACTGTGGTGCTGGCTACTCTGAGCGACTCTGAAAGCAAGGGCTCCTCTCAGCCTACAGAGACGCTGGCCCCTTCTACCCCCAGgtgTTTAGATACTGCTGTTCTACCTGTGGGTTCATGTGAGGCAGACAGCAGTATGGCTCAGGATAATCCTGCTGTCATGGAGATGATACCATCCAGCCAGGGCAGCCCTATAACCAACCTACCTGCTCttatgctgctgctgcagcctgaGACCGATGACCCTAACAGGCGCGGTGTAGATGATGAGGCCTTTGCCAGTGCCACCTCGACTCCTGCTTCCTCCATGATCTGCTCCCTCCTGTTCAGGGCCTCAGACCAGGACGGTGATGGCTGTGCTGCCAGACTGCCTGTTCTGGCATGCTACAGTGACGAAGAGGAGAATTTGGAGGAAGACTACACAAGAAGCCCTTCCCTCTGAGAACAGGGCTGA

Function

GO:

id name namespace
GO:0000075 cell cycle checkpoint biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process

KEGG:

id description
K10995 RAD9B; cell cycle checkpoint control protein RAD9B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80492 lncRNA upstream 26418 7874814 ~ 7878371 (+) False atp2a2a
TU80491 lncRNA upstream 26418 7877168 ~ 7878371 (+) False atp2a2a
TU80365 lncRNA upstream 257640 7646705 ~ 7647149 (+) True G59839
TU80363 lncRNA upstream 268735 7635595 ~ 7636054 (+) True G59837
TU80343 lncRNA upstream 273548 7630506 ~ 7631241 (+) True G59826
TU80483 lncRNA downstream 7257 7920777 ~ 7924556 (+) True G59931
TU80665 lncRNA downstream 313372 8226892 ~ 8227173 (+) True G60082
TU80669 lncRNA downstream 318484 8232004 ~ 8236195 (+) False G60084
TU80667 lncRNA downstream 322039 8235559 ~ 8236527 (+) False G60084
TU80668 lncRNA downstream 322039 8235559 ~ 8238788 (+) True G60084
XM_039803274.1 mRNA upstream 195 7898563 ~ 7904594 (+) True LOC120560606
XM_039803275.1 mRNA upstream 4265 7888678 ~ 7900524 (+) True LOC120560607
XM_039803270.1 mRNA upstream 27665 7847671 ~ 7877124 (+) True atp2a2a
XM_039803271.1 mRNA upstream 27665 7847685 ~ 7877124 (+) False atp2a2a
XM_039803852.1 mRNA upstream 58984 7821305 ~ 7845805 (+) True ift81
XM_039803965.1 mRNA downstream 33732 7947252 ~ 8051340 (+) True cux2b
XM_039803966.1 mRNA downstream 34911 7948431 ~ 8051340 (+) False cux2b
XM_039803082.1 mRNA downstream 141845 8055365 ~ 8078168 (+) True mtmr3
XM_039803083.1 mRNA downstream 164782 8078302 ~ 8083374 (+) True LOC120560501
XM_039803058.1 mRNA downstream 259040 8172560 ~ 8204063 (+) True bicdl1
XR_005639609.1 other upstream 205538 7699133 ~ 7699251 (+) True LOC120561497
XR_005639608.1 other upstream 206744 7697927 ~ 7698045 (+) True LOC120561496
XR_005639610.1 other upstream 211580 7693091 ~ 7693209 (+) True LOC120561498
XR_005639604.1 other upstream 213997 7690674 ~ 7690792 (+) True LOC120561492
XR_005639603.1 other upstream 220026 7684645 ~ 7684763 (+) True LOC120561481
TU80548 other downstream 114672 8028192 ~ 8035361 (+) False cux2b
XR_005639399.1 other downstream 518017 8431537 ~ 8434672 (+) False LOC120560007
XR_005639400.1 other downstream 518017 8431537 ~ 8434666 (+) True LOC120560007
unassigned_transcript_244 other downstream 530934 8444454 ~ 8444525 (+) True trnaw-cca_2
unassigned_transcript_245 other downstream 532098 8445618 ~ 8445689 (+) True trnaw-cca_3

Expression Profile