RNA id: TU81938


Basic Information

Item Value
RNA id TU81938
length 1757
RNA type TUCP
GC content 0.52
exon number 3
gene id G61139
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 12921147 ~ 12923836 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cattaaaaccaggaaagcAGAGTTCAAAAATGCATAAGATTTTATTAACATGAACAGCAGACAGAACACTGAAAACTGGATAGACATGGAACGTTATTTCACTACAACTTCTGCAGAGCTTTATAGAAGTGACCCATTTAGGCCAGCTCCTCCTCACCCTCCTCCTCAAACTCGCCCTCCTCCTCAGCAGTGGCATCCTGGTACTGCTGGTACTCAGACACCAGGTCGTTCATGTTGCTCTCTGCCTCTGTGAACTCCATCTCATCCATACCCTCGCCGGTGTACCAGTGGAGGAAAGCTTTGCGCCTGAACATAGCAGTGAACTGCTCAGAGATGCGCTTGAACAGCTCCTGGATGGCTGTGCTGTTGCCGATGAAAGTGGCAGCCATCTTGAGGCCACGGGGAGGAATGTCGCAGACGGCGGTCTTGACGTTGTTGGGGATCCATTCAACAAAGTAGCTGCTGTTCTTGTTCTGCACGTTCAGCATCTGCTCATCCACCTCCTTCATGGACATGCGGCCGCGGAAGATGGCAGCCACCGTAAGGTAACGGCCGTGACGCGGGTCGCAGGCGGCCATCATGTTCTTGGCGTCGAACATCTGCTGGGTGAGCTCCGGCACAGTGAGTGACCTGTACTGCTGGCTGCCTCGGCTTGTGAGGGGAGCAAAGCCTGGCATGAAGAAGTGCAGACGGGGGAATGGCACCATGTTTACCGCAAGCTTACGCAGGTCGGCGTTGAGCTGTCCGGGGAACCTGAGGCAGGTGGTGACACCGCTCATGGTGGCAGAAACCAAGTGGTTGAGGTCACCGTATGAGGGGGTTGTGAGTTTAAGGGTGCGGAAACAGATGTCATACAAAGCCTCATTGTCGATGCAGTAGGTCTCGTCCGTGTTTTCTACAAGCTGGTGGACCGATAGTGTGGCGTTGTAGGGCTCAACAACTGTGTCCGATACTTTTGGGGAAGGCACCACGCTGAAGGTGTTCATGATGCGGTCGGGGTACTCTTCACGGATCTTGCTGATGAGCAGGGTGCCCATACCAGAGCCTGTACCACCACCCAGGGAGTGTGTGAGCTGGAAGCCCTGAAGGCAGTCGCAGCTCTCTGCCTCCTTCCTCACCACATCAAGGACAGAGTCAACCAGCTCTGCACCCTCTGTGTAGTGACCCTTAGCCCAGTTGTTGCCAGCACCACTCTGGCCAACACAAAGTTGTCTGGTCTGAAGACCTGGCCGAAAGGTCCGGACCTCACAGAGTCCATGGTACCTGGCTCCAGATCAACCAGCACAGCACGGGGGACATATTTCCCACCTACAAAAGCAGGTCAGGGGTTAGGGAAATAAATGGCAAAGAAAAGTCTGTACTTTATCCTGTACAAATAAATACTTACCTGAGGCTTCATTGTAGTAAACATTGATCCTGTCCAGCTGCAGGTCACTGTCACCGTGGTATGTACCAGTTGGGTCAATTCCATGCTCGTCACTTATCACCtcccaaaactTTGGCACCAATCTGGTTTCCGCACTGGCCAGCTTGGAGATGCACAATTTCCCTCATTTTGCTTTCTGGAGGTGGGGTGGACCTTTCTACGACTGATACCGCCTttctttatgtgtgtgaacAACGGCTCAACCCTCTATTTTATACTACAACAAGACCCGCCCTTTACGTTTAAGATCGAATGTGTATTGGCTGATTTTCGAAAGCGTCATCTACAGACACACTCTTAAACCAATCAAATGTTTCAATGCTTATCCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81877 lncRNA upstream 239079 12679709 ~ 12682068 (+) True G61091
TU81853 lncRNA upstream 282287 12638608 ~ 12638860 (+) True G61067
TU81834 lncRNA upstream 311689 12609104 ~ 12609458 (+) True G61053
TU81833 lncRNA upstream 313090 12607644 ~ 12608057 (+) True G61052
TU81831 lncRNA upstream 316937 12603756 ~ 12604210 (+) True G61050
TU81962 lncRNA downstream 75623 12999459 ~ 12999887 (+) True G61160
TU81973 lncRNA downstream 246957 13170793 ~ 13180491 (+) False LOC120560904
TU82004 lncRNA downstream 257746 13181582 ~ 13182257 (+) False G61192
TU82005 lncRNA downstream 257746 13181582 ~ 13182308 (+) True G61192
TU82008 lncRNA downstream 258783 13182619 ~ 13184450 (+) True G61194
XM_039803768.1 mRNA upstream 676 12909814 ~ 12920471 (+) True bcl2l16
XM_039804579.1 mRNA upstream 55895 12860590 ~ 12865252 (+) True si:dkey-90l8.3
XM_039802811.1 mRNA upstream 83240 12831272 ~ 12837907 (+) True ccn1l2
XM_039802813.1 mRNA upstream 83240 12831272 ~ 12837907 (+) False ccn1l2
XM_039802812.1 mRNA upstream 83240 12831516 ~ 12837907 (+) False ccn1l2
XM_039803795.1 mRNA downstream 208262 13132098 ~ 13180369 (+) True LOC120560904
XM_039804576.1 mRNA downstream 425305 13349141 ~ 13366210 (+) False lhx2b
XM_039804575.1 mRNA downstream 425306 13349142 ~ 13366210 (+) True lhx2b
XM_039804373.1 mRNA downstream 643723 13567559 ~ 13646350 (+) True adgrd2
XM_039804374.1 mRNA downstream 643723 13567559 ~ 13645504 (+) False adgrd2
TU81647 other upstream 994546 11926183 ~ 11926601 (+) True G60897
XR_005639564.1 other upstream 2168707 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 2168707 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 2168707 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 2174199 10726446 ~ 10746948 (+) False LOC120561142
TU82171 other downstream 1183647 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 1217606 14141442 ~ 14142050 (+) True G61338
TU82219 other downstream 1359581 14283417 ~ 14283871 (+) True G61383
TU82226 other downstream 1393703 14317539 ~ 14319506 (+) True G61390
TU82227 other downstream 1393703 14317539 ~ 14319506 (+) False G61390

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU242703 True 2720 TUCP 0.45 2 CI01000050 2328513 ~ 2331316 (-)
eurasian perch (Perca fluviatilis) TU242703 True 339 lncRNA 0.33 2 NC_053128.1 31045248 ~ 31045754 (+)