RNA id: TU84572


Basic Information

Item Value
RNA id TU84572
length 1919
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G63128
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19873101 ~ 19875144 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTCCTTTCAGTGTTTATTGAGTTTTTGATCTACCAATACTGTCATAtcagacattttcatttttgtaaGGCACAGTTTTGTTCAGATAAAACACTGatcttatttacaaaaaaaaaaatgttcgtACATACATCCTCGCACCTCCTCCCAGTCAAAATGACCCCCCAATGATTGGACCATtattgtaaatatataaaactTTTAATTCatttcaaaaatgtGACTAGATTCAAAGAAAGGACTAGTTATATATTCAAATAAGGGCCTAAGAGTGGATAAATCGCAgttaaaagtgtaaaaacatgGTTGTTTTTCCTCACATTGTTGAAAGGCTTTCAATTTCTTAAAAAGCAGTACGTTATAAAATGAACACTCTACTGCACCCGATCCCATGGGTTGGTTCCTGGTGATGCATTAAGTTATCTAACAGTTCCTAATTGGTTACATGATTGTCTGATATGAATTTCGGTCCAACATGAAGAAGGTTTAGGTTAATTCCCTTGCTCAAAGTTGCCAAATGAAACATTCATCAGGAATACTAGCTGCATTAGTTTGTAAAAGGATGGCAGTACAAACAGCCCTGCTGTTGTAGCCAGAGTTAAGCTCAGGAAATGACCATGATACATGCACCAGGACTAATAAAGACATCTGTGGAAAAACTACATATACCTCAGGTCACTCATCCTTATCGTGCACAGGTGCAATCGTTATTGCTCTATTTTACAATCCAGGGGGGAAatatttagtaaaaaaaataaaatgaagtaCCAGCACTGAAAGATCAAATATGCAGGGTTCCACAAGTAAATCGGCACCACAAAAATTAACTAAAATGACAGTAAAACAAATAATTCACATTAGACAATTTCTGCTGTTGACACGATGATTTCTACCAGCTCCTTTATGGGGTCATGATTACAAAAGCTTTAAGTGGCTATCAGTAATCACTATCTAGCAGTTTAAAAGTATCCCTGTAATCACCATATCTTgcattttactattttaatgaagAAATTAGCAGGAAAATATCAAAACACAATATTGCATGAACAAATTAACATAGCTATAATGCAGTCAATGGTGGTGTTTTTTGTGGGGCAAGAACAAAGGCATTTCAAAATTGTCTATCACTGCATCTATTCACATGCAACGGTGTCAAAGAGCGTGTCAATAGGAAGCATCTTAGCATACATGGGATATCAGATACACAACCAGCCTGGACAGAGAGCTATATACTAATGTATATACCTGTGCATTTTTGTGCCCGTCTTCATGTTAGACTGACAATACCTTCCACAAACTTGTATTGTCATGCATGTTCAATGTCACTACTTTTGACGTTTTTACTCTCCACTTCACAATATTGACGGACATTTCAAAAAGCTGAGATTGGGATATTTGGTCAGTCACTGTAATTACTATAGCTAAAAGTTAGCAAAAAGAAAATTGTCTATGTTCAGACAATCAAAACACTGTATACCAACTTctgaagggaaaaaaagctggtttttccaaatgtccttGGCCCAATATACAATATTCAGTAGGTTGCTCTTACAGAGTTGTTAACCACAGTCCTGTGAAAAAATATTCTTATCACACACTACACTATTTCATATGATCTAGAGTGGCAAAATGGAAGAGAGGGCTCAAAGGCAGCATAAAAGATAAGAAAATGAATACAAGGACAAGTACAGTACAAAcctttatgaaatgaaaagaagaagGCACAGATTTGAAGAGTTGAGACTAGAAGTCATAGAGGTAGCTGAGGTCACAGAGAGGGACAAAGTAGGAAAAggaaactgtttaaaaaaaggggaGATGTGTGATGAAATGTCTATCTGTCCTTGGATCCAAGCTTCTCGATCAAGTCCTGCAGGGGAGCAAGCTCTCGCCTGTCGATGAGGTTGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84504 lncRNA upstream 40774 19780965 ~ 19832327 (+) True G63087
TU84494 lncRNA upstream 110047 19759812 ~ 19763054 (+) False c6h2orf68
TU84495 lncRNA upstream 110047 19760754 ~ 19763054 (+) False c6h2orf68
TU84485 lncRNA upstream 125632 19746949 ~ 19747469 (+) True G63076
TU84473 lncRNA upstream 155626 19716498 ~ 19717475 (+) True G63068
TU84665 lncRNA downstream 139860 20015004 ~ 20015249 (+) True G63189
TU84666 lncRNA downstream 141088 20016232 ~ 20016661 (+) True G63190
TU84668 lncRNA downstream 142973 20018117 ~ 20018412 (+) True G63192
TU84678 lncRNA downstream 149769 20024913 ~ 20025748 (+) True G63202
TU84679 lncRNA downstream 150611 20025755 ~ 20026755 (+) True G63203
XM_039803014.1 mRNA upstream 66559 19800122 ~ 19806542 (+) True selenom
XM_039803002.1 mRNA upstream 109577 19759596 ~ 19763524 (+) False c6h2orf68
XM_039803001.1 mRNA upstream 109577 19760793 ~ 19763524 (+) True c6h2orf68
XM_039803000.1 mRNA upstream 119124 19749201 ~ 19753977 (+) True sftpbb
XM_039802954.1 mRNA upstream 325815 19544329 ~ 19547286 (+) True spaw
XM_039803582.1 mRNA downstream 8066 19883210 ~ 19887470 (+) True mthfd2
XM_039802415.1 mRNA downstream 14106 19889250 ~ 19891659 (+) True arl6ip4
XM_039803911.1 mRNA downstream 66329 19941473 ~ 19942849 (+) True mtrfr
XM_039803912.1 mRNA downstream 66464 19941608 ~ 19942849 (+) False mtrfr
XM_039803909.1 mRNA downstream 68684 19943828 ~ 19948469 (+) False kmt5ab
TU84360 other upstream 424151 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1191940 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1453511 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1457095 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1541871 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 602668 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 602668 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 801273 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1713732 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 3054755 22929899 ~ 22930205 (+) True G63905

Expression Profile