RNA id: TU85090



Basic Information


Item Value
RNA id TU85090
length 286
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G63483
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20682598 ~ 20682883 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTTCCTGCAGTTTATCCAACAAATCATATAGCTCCATGCGAGCAtaggctgtggtcatggcccctataaaaacattcacatctttTACTCTGGATGCGACCCCCTCTGTGTATCGCCATTGGACAATCGCTACTTCTGGTGAGATGAATGAGAACTGGCGAACATCAAAAGTGTCGCTGAACATGAGCTGTGTGAAGCGGGATGGTTCGGTTATGAGCTCAGCAGTAGTCATGTTGCTACGCATGGCAAATTTGCCCCAAAGACTATTCAgaagcaatttatttgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85054 lncRNA downstream 48097 20634261 ~ 20634501 (-) True G63456
TU85052 lncRNA downstream 62259 20620063 ~ 20620339 (-) True G63454
TU85048 lncRNA downstream 123741 20558345 ~ 20558857 (-) True G63450
TU85033 lncRNA downstream 226628 20454870 ~ 20455970 (-) False LOC120560417
TU84985 lncRNA downstream 289971 20392416 ~ 20392627 (-) True G63397
TU85110 lncRNA upstream 363050 21045933 ~ 21049837 (-) True G63502
TU85111 lncRNA upstream 371282 21054165 ~ 21054695 (-) True G63503
TU85143 lncRNA upstream 461696 21144579 ~ 21173476 (-) True G63524
TU85138 lncRNA upstream 482049 21164932 ~ 21209152 (-) True G63522
TU85228 lncRNA upstream 663534 21346417 ~ 21347506 (-) True G63595
XM_039803736.1 mRNA downstream 184702 20492094 ~ 20497896 (-) True LOC120560855
XM_039802895.1 mRNA downstream 204793 20451594 ~ 20477805 (-) True LOC120560417
XM_039802688.1 mRNA downstream 232090 20442270 ~ 20450508 (-) True gna14a
XM_039802689.1 mRNA downstream 233437 20442270 ~ 20449161 (-) False gna14a
XM_039803967.1 mRNA downstream 334408 20328455 ~ 20348190 (-) True LOC120561015
XM_039804081.1 mRNA upstream 373950 21056833 ~ 21139974 (-) True bmpr1ba
XM_039803173.1 mRNA upstream 463192 21146075 ~ 21208072 (-) True pdlim5a
XM_039803175.1 mRNA upstream 463192 21146075 ~ 21208060 (-) False pdlim5a
XM_039803174.1 mRNA upstream 463192 21146075 ~ 21208059 (-) False pdlim5a
XM_039803176.1 mRNA upstream 463192 21146075 ~ 21208058 (-) False pdlim5a
TU84919 other downstream 400387 20270777 ~ 20282211 (-) True G63345
TU84540 other downstream 951025 19711448 ~ 19731573 (-) True LOC120561342
TU84427 other downstream 1127704 19549461 ~ 19554894 (-) False LOC120560442
TU84258 other downstream 1482365 19179505 ~ 19200233 (-) True si:ch211-225b11.1
TU84214 other downstream 1580148 19101241 ~ 19102450 (-) False ficd
TU85094 other upstream 8995 20691878 ~ 20692279 (-) True G63487
XR_005639466.1 other upstream 933340 21616223 ~ 21626907 (-) False rmi1
TU85596 other upstream 2147312 22830195 ~ 22833089 (-) True G63882
TU85750 other upstream 2592037 23274920 ~ 23281086 (-) False smim15
TU86268 other upstream 4383962 25066845 ~ 25070763 (-) False LOC120560369

Expression Profile