smim15 (smim15,LOC106580593,LOC103398561)


Basic Information

Item Value
gene id smim15
gene name smim15,LOC106580593,LOC103398561
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23274919 ~ 23281128 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU85750
cggaaCATGCCTGCGCCATCCTGGGAAGGAAATACTTGCACCCCGGAACAGGGAGGAACTGGAACTCATTATCGTGGATATAAAAACAATCTCTGCACATTGGTTTCATTAAGCCTCACTGTTGCTGACCAGGATGATTGACGTTCGGGCATGGGCAGAGTATGTGGTGGAGTGGGCTGCCAAAGACCCCTATggtttcctcaccactgtcataCTGGCTCTCACACCTCTCTTCATTGCCAGTGCACTGCTGTCCTGGAAACTGGCCAAGATGATTGAGGCACGTGACCGGGAACAGAAGAAAAAGCAGAAACGTCAAGAAAACATAGCCAAGGCCAAGAGGACCAAGAAAGACTGAGCCTGTGGGTAGAATGGGGGCATAAAAAAGGAGGAGCAACCACCACGCTCACAGCCCTCCTTATTCCAAATAATGACATAGTGCCCTTCGTTGTTCCAGCCCTACTGTCAGCACAGGGCCACTACGCCTCATATCCGGGATAGGAGACTGGCCCCACAGGCCTAACAGTGCAGAGACGGACAGTACTGCCCGAAGGAGGCTCGTCCCAATGGGACTTTGGTCAGCAAGAGCACAGTGGTCATCTGTATGATGGCTTTTATACAGACATCCGCTGATAATATTGTACAGCTGTTGCAACACCTTGCATTCCATTGTTAGCATCCATGTTCTGCTGAATTGATGATGTAATGAGCATACTGGAACTTTTTCCAAAATATCCCAGATACTACTTTCTAATCAATAAAGTTTTCATGGTTGATAAGA
>XM_039802626.1
gtcagggtaatccaatcagaggcagagtaaggcagagtagggcggaaCATGCCTGCGCCATCCTGGGAAGGAAATACTTGCACCCCGGAACAGGGAGGAACTGGAACTCATTATCGTGGATATAAAAACAATCTCTGCACATTGGTTTCATTAAGCCTCACTGTTGCTGACCAGGATGATTGACGTTCGGGCATGGGCAGAGTATGTGGTGGAGTGGGCTGCCAAAGACCCCTATggtttcctcaccactgtcataCTGGCTCTCACACCTCTCTTCATTGCCAGTGCACTGCTGTCCTGGAAACTGGCCAAGATGATTGAGGCACGTGACCGGGAACAGAAGAAAAAGCAGAAACGTCAAGAAAACATAGCCAAGGCCAAGAGGACCAAGAAAGACTGAGCCTGTGGGTAGAATGGGGGCATAAAAAAGGAGGAGCAACCACCACGCTCACAGCCCTCCTTATTCCAAATAATGACATAGTGCCCTTCGTTGTTCCAGCCCTACTGTCAGCACAGGGCCACTACGCCTCATATCCGGGATAGGAGACTGGCCCCACAGGCCTAACAGTGCAGAGACGGACAGTACTGCCCGAAGGAGGCTCGTCCCAATGGGACTTTGGTCAGCAAGAGCACAGTGGTCATCTGTATGATGGCTTTTATACAGACATCCGCTGATAATATTGTACAGCTGTTGCAACACCTTGCATTCCATTGTTAGCATCCATGTTCTGCTGAATTGATGATGTAATGAGCATACTGGAACTTTTTCCAAAATATCCCAGATACTACTTTCTAATCAATAAAGTTTTCATGGTTGATAAGAA

Function

symbol description
smim15 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM15 (small integral membrane protein 15).

NR:

description
PREDICTED: small integral membrane protein 15

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85750 False 781 TUCP 0.48 2 23274920 23281086
XM_039802626.1 True 824 mRNA 0.49 2 23274919 23281128

Neighbor

gene id symbol gene type direction distance location
ercc8 ercc8,LOC102791225 coding downstream 15367 23237353 ~ 23259552 (-)
elovl7a elovl7,LOC103364291 coding downstream 38578 23231524 ~ 23236341 (-)
pde4d pde4d,LOC102308022,LOC103135434,LOC106585366,LOC102789696 coding downstream 53267 22999806 ~ 23221652 (-)
si:dkey-190g11.3 NA coding downstream 293092 22979891 ~ 22981827 (-)
plk2b plk2 coding downstream 295646 22974264 ~ 22979273 (-)
pgm5 pgm5,LOC101471836,LOC102214827,LOC102292636 coding upstream 75225 23356353 ~ 23383596 (-)
cbwd cbwd1,cbwd3 coding upstream 106636 23387764 ~ 23403313 (-)
fancc LOC104947785 coding upstream 282351 23563479 ~ 23595624 (-)
ptch1 ptch1,LOC103398858 coding upstream 330249 23611377 ~ 23671573 (-)
hsd17b3 NA coding upstream 461657 23742785 ~ 23749839 (-)
G63916 NA non-coding downstream 276729 22967916 ~ 22998190 (-)
G63926 rab3c,LOC102308854,LOC106945488 non-coding downstream 278038 22995155 ~ 22996881 (-)
G63906 NA non-coding downstream 344712 22929899 ~ 22930207 (-)
G63902 NA non-coding downstream 368893 22903835 ~ 22906026 (-)
G63900 NA non-coding downstream 382091 22892465 ~ 22892828 (-)
G64059 dock8 non-coding upstream 203720 23484848 ~ 23487484 (-)
G64107 NA non-coding upstream 410558 23691686 ~ 23692599 (-)
G64122 NA non-coding upstream 441809 23722937 ~ 23723181 (-)
G64165 NA non-coding upstream 711705 23992833 ~ 23993303 (-)
G64166 NA non-coding upstream 712485 23993613 ~ 23993866 (-)
G63882 LOC104956296,LOC101068944 other downstream 441830 22830195 ~ 22833089 (-)
LOC120560435 idnk other downstream 1583369 21681976 ~ 21691550 (-)
rmi1 rmi1 other downstream 1647898 21616223 ~ 21627021 (-)
ntrk2a ntrk2 other downstream 1690643 21479786 ~ 21584276 (-)
G63487 NA other downstream 2582640 20691878 ~ 20692279 (-)
foxd5 LOC103358907,LOC104942959 other upstream 103590 23384718 ~ 23387305 (-)
lzts3b lzts3,LOC102793849 other upstream 1595467 24876595 ~ 24937440 (-)
rnf165b LOC102783683,LOC101475525,LOC103362723,LOC103470112,LOC101070551,LOC100705592,LOC107086292,LOC106944956,LOC103141773,LOC106924720 other upstream 1720195 25001323 ~ 25016921 (-)
LOC120560369 LOC104950284,LOC103362719 other upstream 1785632 25066760 ~ 25080769 (-)
mapkapk5 mapkapk5 other upstream 1808807 25089935 ~ 25105430 (-)

Expression


Co-expression Network