foxd5 (LOC103358907,LOC104942959)


Basic Information

Item Value
gene id foxd5
gene name LOC103358907,LOC104942959
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23384718 ~ 23387305 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU85774
CAACAACATCCCACCTCCGACTGTGCTGCTGTACGATTTGTCATATCAGATGATTAAAATACCAAGAGTTAACTTTAACCTCATATAAATCTATTTTGGTAGCATGTGTACATGTCAGACACAGAACACTGCGTACACCAGGCTCACATACCATAAGGTGCACACCAACCAAGTGTTTACTGTGTGTGCTGCATGACTGCAACAAGTGATGAGCCAAAATAACACCGTAGTGATTTTGTTAATGTGTAGGGCCAATATTCATCAAG
>XM_039803691.1
AGTGTTGCATTTAAGACAAAATGTTGaattgcagctttaattacgtTAGTGCTTATACTGCTTGACAGTCATTCAGTTTTCTGTTACTTTGGCTTTTAATGGTGCAATCATGTGAGAgccatctctctcacacacacagtaggcCCAGTAAGGTGAGGAAATAGGTGGAGTTTTCCCAACTTAGTCATTTGCAATGGAAATAGTTTAGCAGCAAGGTTTTAGCACATATCCGCTGGTGGACCGGTTTGCTTTGAGGATGGCTCTGCTTATTCATCCCGGCCGTAAAGCCGAGCTGAACCCTGTAGCCCAGAGCGCATCGTTCAGCTGCGTCGTTTCCTACTCGATTCTGATGCTGATGGCCTCGTTAAGGCGACTATTGCCTCTTTTCTTTGCTGGCTGCGGGAAGCCCTACCACGGCCATTTTCATGGTCACACCACCCGCAGGCATCCAGAGGTGGCAAACTAAACGAACCCGCGGGGGTTCCGAGGGGGAAACACTTGGTTTCTTAGCACTCACTAGGCGGGGTGTTAAAATTCCCAACAACATCCCACCTCCGACTGTGCTGCTGTACGATTTGTCATATCAGATGATTAAAATACCAAGAGTTAACTTTAACCTCATATAAATCTATTTTGGTAGCATGTGTACATGTCAGACACAGAACACTGCGTACACCAGGCTCACATACCATAAGGTGCACACCAACCAAGTGTTTACTGTGTGTGCTGCATGACTGCAACAAGTGATGAGCCAAAATAACACCGTAGTGATTTTGTTAATGTGTAGGGCCAATATTCATCAAGGAATGTCTCAATACAAAGATATGTGAGCTGTGAGGGTAAGCTTtcagttttttctttattttattttatgttattttgtgtTGCACCCTCTCGAGCCGTTTGGCTATTGAAATATCCTTATTGGCCAAAATACAACAGGTTGCCATCTATAAATTGAGCTTTCTTTGCATGAATAGGCGTGCGCACCTCAGGACTCCCCAAACCCCCCCAGCTGTGTGTTGCTCCCCGCGGTGAGTGGCTACTCTGATAGGTCCAGAGGGTTAATGGGACTGGCCTGCAGGGCAGCAGTCTCCCAGCATATAAAGCCTTAGCCCTCCTTACCACAACAAACAGACAGTATACCGGACGGTAGATGCGCTTTTACGCGTTAATAGGGgtctattggtttgtacgcacACCGAACCATTAATGCCTCTTTGGCACGGTTGAGATTTTactcgtttttgtttttttaacattctgcGTGTGACCATGACTCTCTCCAGTGAATTTGAGGCTTCGCAGCACGCTGCTTTGCCCCTAGAAGAGGATGAGATTGACATAGTGGGCGAGGATGAGCCTAACCACGGGCGTTTATATCGAAATGAGTGCTCCACGGACCCCGGCTCCTCAGCAGAATCTGGTGCTGAGTTTGACTCTTCAGAGCCAGACTCCTCGGGGGAAAGCGAGAACAGTTTCTGCGCAGACGCACCGCCGTCCAGGAAAGCTCAGAACAGCTCGGTAAAGCCTCCCTACTCCTACATTGCCCTCATCACTATGGCCATCCTGCAGAGCCCGGTGAAGAAGCTGACGCTGAGTGGCATCTGTGACTTCATCAGCAACAAGTTTCCCTACTACAGAGACAAGTTCCCCGCTTGGCAGAACTCCATCAGGCACAACCTGTCTCTCAACGACTGTTTCATCAAGATCCCGAGGGAGCCTGGGAACCCGGGCAAAGGTAACTACTGGTCTCTGGACCCTGCCTCAGAGGACATGTTCGACAACGGCAGCTTCCTTCGGCGAAGGAAGCGCTTCAAGAGAAACCAGCCCGAATTCGGGAAAGACGGACTTATGTTTTATTCCAACTTGAACTGCTACCGGCCGTACGGGCAACCATATTGCTTACAAGGCCAGGTAAGCCCCCCGCCCGCTGCTCCTATCCGGTACATGCCTCTACAGGAGGGCATCATGATGCCTCCCTCTTCCTATCACCTACTACCACAAACTTTGAACAGTCACAGGAAGTGCAGTGGGCCTAAAGACTTCAGAGCGCAGGTTTGCGCACCAGAACCGCCTGGCCCGCAGGCAAAGTGCTCTTTCAGCATTGACAGCATCATGAGCAAGCCCTCTCCCAACTGTCCACAGAACCCGAATCCACAGCAGAGCCCTCGCAGCGCTCTTGGGTACGGTCACCTCATGGTTCCGACGCTCCTGCACGATCCCAGGACTCCGGTGTTCTGCCCTCCTGCCATGCTGAGCACGGCTCCTTTAAGAAACGAGCACCTCAGACTCTCTTACCATCACTGCTGAAGCCTTTAGTGTCTGTATGTTTGATGATATGTGAAGACACGTCGGTGTAGCTCATTTcttaaagaaatgttttaattgCATGATATTTATGTACGTTGACCGTCAAAGTTATATGTCTCAAAAGAAATCAGTGTAAATAAGATGAGTGGTAATATATTTGCGAGACTTGCTGCAGTGAAAACCAtcgttgtgtttttgttattaattAACGTGTCAAataataaatgtctgaaaaataTCTGTGATGTTTAAAGCtctttatttggtttatttag

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09397 FOXD; forkhead box protein D

RNA

RNA id representative length rna type GC content exon number start site end site
TU85774 False 266 lncRNA 0.41 1 23386502 23386767
XM_039803691.1 True 2588 mRNA 0.48 1 23384718 23387305

Neighbor

gene id symbol gene type direction distance location
pgm5 pgm5,LOC101471836,LOC102214827,LOC102292636 coding downstream 1122 23356353 ~ 23383596 (-)
ercc8 ercc8,LOC102791225 coding downstream 125166 23237353 ~ 23259552 (-)
elovl7a elovl7,LOC103364291 coding downstream 148377 23231524 ~ 23236341 (-)
pde4d pde4d,LOC102308022,LOC103135434,LOC106585366,LOC102789696 coding downstream 163066 22999806 ~ 23221652 (-)
si:dkey-190g11.3 NA coding downstream 402891 22979891 ~ 22981827 (-)
cbwd cbwd1,cbwd3 coding upstream 459 23387764 ~ 23403313 (-)
fancc LOC104947785 coding upstream 176174 23563479 ~ 23595624 (-)
ptch1 ptch1,LOC103398858 coding upstream 224072 23611377 ~ 23671573 (-)
hsd17b3 NA coding upstream 355480 23742785 ~ 23749839 (-)
htr1aa htr1a,LOC102795852,LOC103358896 coding upstream 592908 23980213 ~ 23982129 (-)
G63916 NA non-coding downstream 386528 22967916 ~ 22998190 (-)
G63926 rab3c,LOC102308854,LOC106945488 non-coding downstream 387837 22995155 ~ 22996881 (-)
G63906 NA non-coding downstream 454511 22929899 ~ 22930207 (-)
G63902 NA non-coding downstream 478692 22903835 ~ 22906026 (-)
G63900 NA non-coding downstream 491890 22892465 ~ 22892828 (-)
G64059 dock8 non-coding upstream 97543 23484848 ~ 23487484 (-)
G64107 NA non-coding upstream 304381 23691686 ~ 23692599 (-)
G64122 NA non-coding upstream 335632 23722937 ~ 23723181 (-)
G64165 NA non-coding upstream 605528 23992833 ~ 23993303 (-)
G64166 NA non-coding upstream 606308 23993613 ~ 23993866 (-)
smim15 smim15,LOC106580593,LOC103398561 other downstream 103590 23274919 ~ 23281128 (-)
G63882 LOC104956296,LOC101068944 other downstream 551629 22830195 ~ 22833089 (-)
LOC120560435 idnk other downstream 1693168 21681976 ~ 21691550 (-)
rmi1 rmi1 other downstream 1757697 21616223 ~ 21627021 (-)
ntrk2a ntrk2 other downstream 1800442 21479786 ~ 21584276 (-)
lzts3b lzts3,LOC102793849 other upstream 1489290 24876595 ~ 24937440 (-)
rnf165b LOC102783683,LOC101475525,LOC103362723,LOC103470112,LOC101070551,LOC100705592,LOC107086292,LOC106944956,LOC103141773,LOC106924720 other upstream 1614018 25001323 ~ 25016921 (-)
LOC120560369 LOC104950284,LOC103362719 other upstream 1679455 25066760 ~ 25080769 (-)
mapkapk5 mapkapk5 other upstream 1702630 25089935 ~ 25105430 (-)
commd10 commd10,LOC102791033 other upstream 2101177 25488482 ~ 25547852 (-)

Expression


Co-expression Network