fancc (LOC104947785)


Basic Information

Item Value
gene id fancc
gene name LOC104947785
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23563479 ~ 23595624 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803797.1
TTCGCGGAAATCTGAGAGAAGAGGGAAGTTCAGTTTGTTTACATCGCGGGACGAAAGCGTTTGCCTTATTGTCTGAACATATACAAAATTAATGGATACAACGTTAGCTGACTTCTGCTCTGTGAAGATTTCAGTCTGATGATTGCACGTCTTGTTTACATCTAACTACAGTAGAGTGGAGGAAAATACTGGCATCCTGTGGTATGGTGTAGTTGTTGCACCCCAACGTTTTACTAAGGATCTTGCTTGGATCCTAAGTACATTCACCTGTACAAGCAGCGAAATGTCTCAGCTGCAGCCCCTGATCCAGCTCCAACAAATGGCAGAGCCCCTGCTGAACGTCCAGGAGATGCAATTCTGGCTGGACAGAGCAGTGGCTTGGGGCCAGGCTGATAGCTCAGACACTCAGAAAGACACCTGCCTGCACTTGAGCAGACTGAGGGATTTCCTCCAGCAACTCCTCACCCATATCAACAACATGAGTTCCACGACAGAGACCATGAAGAGGCTGCCCCTCCTAGGCCAGTTTCTTGGCCGACTCTGCTGGAACCCTTATGTCACTGCTGATGCTACAGGCAGAAGGCTGTTGTTCCAGTGTCTGTGGGGACTTTACTCTGAGCATCCAGGCAATGCTGTGGAAAGAAAAGCCAACCAGTGGATACGGAAAGTGCTGTGTCAGCTTGCTACAGAAGAAGACGATGCTGCAGCGCAGGCATTAATGAAGCAAATGGGTGTACCACCTAAAGAGTATCATCTCAAAGTTCTGAGAAAGATGGTGGAATTGCTGCAGAAAAACATTGGGAAGAGCTGCCGTTCTTTGGGTGACATAAATCAGAGGTGTTCATGTGACAACATTCTGGCCACATCAGAGGCTTGTGTCCCCCTGGTCACTTATCCCGAGGCTGCTCCTCTCATTGGTGCACTGCTGCAGCAGCCAAAGACTTGTGTCAGGGCAGCACTTAGTGAAGACTTCCTGGATTCTCTGAGCTCTGCCTATTCCAGCCAATGCTTGTCTTTGGAGGAGCAGGCAGTAGTCTCTCTGTGGTATCACAACCTGTCCAGTCTGGAAAAAGCAGTGCTCAGTCTGCTGGAGTGTGTTCTCACCAAAACAGGTTCAATACCACAGAAGCTAAAGCAGCAACTGTCACAGTCACTGCTGccTAAAGCCTGTGCACAACACTGCACCATATTCTTGGTCGTAAACGACATCTTCAGGTTCATCCTTAAGCAAGCTGAAGGGAACGAGTCTGTTAAGTATATTATCCAAACCTTTACCAACTGTTTCCTCCAGGAAGTGGCACTGCTGCAGCATCAGACAAGTGTATCCTTGAAGGCCTTTTTCCCACAGTCACCTCAGAGTCTGCTGTTTCCTCTCTTGACCCGGCCGTCAGAGATGCCTCAGGAAGTTTGGAGACATCACCTGAACTGGCTCAGTGGCTCATTACAGAGActgacagaggaggaagaggatggaGACGGAGACAGCAGCAGTAGCACCAGAGGGCACCACAAAATGTTTGAGGCCTGGTTCCTGCTGGTTCAGTGTGCCCACTGGGTACAGGTGGCCATCCAGCTGTTGGTGACATCTGGGCCTGATGACCGTGGCCCCCTGCTGTGGCTGCTGACCTTCTACCACCACCCCACCAACAGGGGGCACCACCGAGCACTACAGCTGGTACATGCCAAAGAAGCATGGCACCACCTGCACTCCCTGTTCTTGGTCTTAGCTCGTCCTCTTCCTGTGGGCCTTCTGCAGTCATTGGTCACTCTTCTGTCACCACAACCTCAGCAACCATCACTGTCTCCATTATTGATCCTCAAGCTCTTAGTCAACTTTGCTGTTTTCTTCCAACAATCGCTGAGCGGATCAACCGAGATTTTACAGACGGTGGTGGAGCGGTCTGGTCTGGTTGATGAAGCAGCGTGTGTTCTCAGCTCGCTGGAGCTCGGACTAAACGAAGGAAGCTGCTTATCAAGCGACGCTAACAGAGTTCATCTCAGGATCGAAGCACTTCAAGACACACTGGCACATGCATGCAGCACCGAGCCCTACCGAgaacaaagcacacacactcacacctaaaacacacacacacacacacaataatgcaCAGAACCACACAGCAGTAAGTTCATCCTCGGCTCAGGGTTTTTTCAGGGCACCTTTGCAGAATGACAAATAGCCAAGTTCTTGTGTAGATATGCTGCGGCGCAATGACAGGAGTGTGTCAAAACAGCACAGCGAGGACAGATTATGTATAGAGGctacaattacacacacacacacacacacacacacacacacacacacacacacacacacacacacactacaaggCCCACAAGGACACTTGAGCAGTGACAGATCACACTGCAAAGAAGCAGCAGCTCATACGACGTGTCAGAGTCTTCCCACTCATATAATTGCCTCACAATATAAATCCTTCATGTTACACATACTGACTGAAATACATTTAGGTTTGGAAGAGAGGGAAACTGAACACCAGTTATCTTTGTTTAAATACTATTTGTGTTAAAAGGTTGAAATGTTTATATGAAAAACATTCTGACAGTACGGAgtaaataatgaaatgtatgTCACTCCTTTCTCAATGTACATTTTCTATTGCTTCATTATTCATAAAGATGGAGAATGA

Function

NR:

description
PREDICTED: Fanconi anemia group C protein isoform X1

GO: NA

KEGG:

id description
K10890 FANCC; fanconi anemia group C protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803797.1 True 2657 mRNA 0.48 17 23563479 23595624

Neighbor

gene id symbol gene type direction distance location
cbwd cbwd1,cbwd3 coding downstream 160166 23387764 ~ 23403313 (-)
pgm5 pgm5,LOC101471836,LOC102214827,LOC102292636 coding downstream 179883 23356353 ~ 23383596 (-)
ercc8 ercc8,LOC102791225 coding downstream 303927 23237353 ~ 23259552 (-)
elovl7a elovl7,LOC103364291 coding downstream 327138 23231524 ~ 23236341 (-)
pde4d pde4d,LOC102308022,LOC103135434,LOC106585366,LOC102789696 coding downstream 341827 22999806 ~ 23221652 (-)
ptch1 ptch1,LOC103398858 coding upstream 15753 23611377 ~ 23671573 (-)
hsd17b3 NA coding upstream 147161 23742785 ~ 23749839 (-)
htr1aa htr1a,LOC102795852,LOC103358896 coding upstream 384589 23980213 ~ 23982129 (-)
LOC120561045 NA coding upstream 390473 23986097 ~ 23991130 (-)
c7a NA coding upstream 419489 24015113 ~ 24025897 (-)
G64059 dock8 non-coding downstream 75995 23484848 ~ 23487484 (-)
G63916 NA non-coding downstream 565289 22967916 ~ 22998190 (-)
G63926 rab3c,LOC102308854,LOC106945488 non-coding downstream 566598 22995155 ~ 22996881 (-)
G63906 NA non-coding downstream 633272 22929899 ~ 22930207 (-)
G63902 NA non-coding downstream 657453 22903835 ~ 22906026 (-)
G64107 NA non-coding upstream 96062 23691686 ~ 23692599 (-)
G64122 NA non-coding upstream 127313 23722937 ~ 23723181 (-)
G64165 NA non-coding upstream 397209 23992833 ~ 23993303 (-)
G64166 NA non-coding upstream 397989 23993613 ~ 23993866 (-)
G64206 NA non-coding upstream 549823 24145447 ~ 24145773 (-)
foxd5 LOC103358907,LOC104942959 other downstream 176174 23384718 ~ 23387305 (-)
smim15 smim15,LOC106580593,LOC103398561 other downstream 282351 23274919 ~ 23281128 (-)
G63882 LOC104956296,LOC101068944 other downstream 730390 22830195 ~ 22833089 (-)
LOC120560435 idnk other downstream 1871929 21681976 ~ 21691550 (-)
rmi1 rmi1 other downstream 1936458 21616223 ~ 21627021 (-)
lzts3b lzts3,LOC102793849 other upstream 1280971 24876595 ~ 24937440 (-)
rnf165b LOC102783683,LOC101475525,LOC103362723,LOC103470112,LOC101070551,LOC100705592,LOC107086292,LOC106944956,LOC103141773,LOC106924720 other upstream 1405699 25001323 ~ 25016921 (-)
LOC120560369 LOC104950284,LOC103362719 other upstream 1471136 25066760 ~ 25080769 (-)
mapkapk5 mapkapk5 other upstream 1494311 25089935 ~ 25105430 (-)
commd10 commd10,LOC102791033 other upstream 1892858 25488482 ~ 25547852 (-)

Expression


Co-expression Network