RNA id: XM_039802176.1


Basic Information

Item Value
RNA id XM_039802176.1
length 1272
RNA type mRNA
GC content 0.46
exon number 7
gene id cfap73
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18432817 ~ 18437190 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGAGGGGAGGAAGGCCCGCTGTCCATGGTCCGAGCTCTCGTAGAAAGTTGGAAAACTAACCAACAACAGCAGGAGGAAGAGTAAAACATGAAGATGATCACCATTAACTCTGTCTGAACACTTCCCAGAGACAACAAAGAGTCATGAGCGTCCGTGAGCAGCTGGTTTCACAGAGATCTCCTGCGGGGGCGAGCCACGTGATAGGAGGACCTCTACGTGACAGGAGCTTTGCCCTTTTTGATCTACAGAAGAAACGCCGGGAAGACGAAGATCTTGATGCAAAGCAAAAGGAATGCAAACAGaTATTGGAGCGTTTGCAACAGCGAATACACAAGTTGCACGAGGAGGCTAAGAAAGTGAAGGAGTTACACTTAAGCTTTGATAAGTTTCTCAAGGATGAGGATGCTGATCAAGCGGCTGAGaaagcagagagggagaggaaagaggtgCTTCAACTGGAGGCAGAGCTTGAGAGGCTAAAGGTGGAGTATGCTGTACTGATAGAGAGGAAACAGGAGCTACAGCGTCAGGTCCAGAGACACTCTTCGTATTGGGACTTCATGGAGCGGGTGGTCAAAATGACCAAGtttGATAAAGTGCAGGCGCTCACAGGTCATTTAGAGAGTCTTCTCCACTTTCGAGACCATCTCTATCAGAGGGAGAGTAAGGCGCAGGAGCAGGTCAGCCAGCAGAGAAAGGCACTGCTGACACTGGAGGACCAGCATCACTTCCTGCGGCTGCACAAGAACAACCAGCTGTCCCAGCTTCAGACCGAGCTAGAGAAGACGCGCTCTGAGGCTCTAACATGGGAAAGGAAGTGGACCCACATTCAGGAAACCGCAGCAAAGAAAACACTCCTACTGGGACAGATTAAGATGGCGACCCTCAACCTCTATGAGATGACAGATGACATATTAGAAGAGGAGGAAGCTGTGGATATGAatgacacagagaaacagctgGACAAGGTCAAGATGTTCATCCAGGACTATGAGGACATAgtaaaacaacatcaaacttCCTCACAGAGACATGAaggacagaaaaaagaaaaggccaAAAAGCTTAATACTGTAATTCAACATTGTAAGAAACTGCACTGAGTGCAACCACTGATTTGTTTTCATGTAGCTCCTCATTAACATGGCCAGATTATACATTCTGAAATGTATCTGATAGTGCTAACTATACATTTGAGGTTGACTTGTTTTAACTTGATAAATACCGTATCTAGTAGCAATATCCAATAAAGTATACtgttggtggttcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83741 lncRNA upstream 44332 18365280 ~ 18388485 (+) True G62533
TU83694 lncRNA upstream 111659 18320643 ~ 18321158 (+) True G62508
TU83688 lncRNA upstream 118040 18313211 ~ 18314777 (+) True G62502
TU83666 lncRNA upstream 135914 18293260 ~ 18296903 (+) False G62484
TU83734 lncRNA downstream 4172 18441362 ~ 18474731 (+) False tpcn1
TU83749 lncRNA downstream 20308 18457498 ~ 18459249 (+) True G62540
TU83769 lncRNA downstream 60773 18497963 ~ 18498301 (+) True G62557
TU83771 lncRNA downstream 61440 18498630 ~ 18498972 (+) True G62558
TU83739 lncRNA downstream 62688 18499878 ~ 18500121 (+) True G62532
XM_039804356.1 mRNA upstream 13603 18407348 ~ 18419214 (+) True tbx5b
XM_039803605.1 mRNA upstream 32076 18389111 ~ 18400741 (+) True si:ch211-204d2.4
XM_039803228.1 mRNA downstream 4157 18441347 ~ 18455076 (+) True tpcn1
XM_039802331.1 mRNA downstream 137798 18574988 ~ 18587715 (+) True si:dkey-98f17.5
XM_039802345.1 mRNA downstream 200504 18637694 ~ 18642437 (+) True p2rx2
XM_039802880.1 mRNA downstream 223967 18661157 ~ 18685463 (+) True acacb
XM_039802881.1 mRNA downstream 223967 18661157 ~ 18685463 (+) False acacb
TU83744 other upstream 13227 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 16811 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 101587 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 423499 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 1898668 16533329 ~ 16534149 (+) False LOC120560897
XR_005639481.1 other downstream 223967 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 997717 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 2040622 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 2040622 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 2239227 20676417 ~ 20677916 (+) True G63480

Expression Profile