RNA id: XM_039802331.1


Basic Information

Item Value
RNA id XM_039802331.1
length 2595
RNA type mRNA
GC content 0.44
exon number 12
gene id si:dkey-98f17.5
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18574988 ~ 18587715 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAAACAACAGAGAGGCGGCTGGTGGCTGTGTTCATAATGTCGGGCAGAAAGCCCCGGTCTGTGGCAAACCCTCTGGAGTCTGCGATCACCACACCGAGTGAGAGGATACTGAAAGAATGCCACAGTTTATATGTCGACAGCAAAAACGGCCTGGTGAAGATTGCCAGCAGCCTCGGAGTCCGTCTCCTGCCTCCCAGAAAGAAGATCATTGTGATGATAATGGGGAACCACTCAGCAGGGAAAAGCTCCTTCATTAACTGGTATGCTGAGGAGCACATACAGAAAACAGGTGTCGCCATTGAAACGCAGGGGTTTACATTCATCACAAGTGGTCGCAAAAAAGAGTCATTGACGgggaatgcaacgctacaTCTCTACCCTCACTTTCGACCACTCCTTGAGTTCAAAGGTCTTATGGACTATCTGTCTGCTGAGATCTCCACCTCCAAGCAGAAGAAGTTCAGTCTGGTGACATTTGTGGACACACCGGGTTTGGTGGACGGGGACATGGTCTACCCTTTTGATGTCAACAGCGCCATCACCTGGTTGGGAGAACAGGCCGACTTGGTATTTGTGTTCTTCGACCCGATGGGCCAGGCGCTCTGCAAACGCACACTCAACATCGTGGAGAAGCTGAGTGAGAAATGCGGAGACAAACTGTTGTTCTACCTCAGCAAGGCAGATGAAGCTGGCaaggaaacagacagacagAGGGTGATGATGCAGATAGTCCAGGAGCTGTGTCGCCGTCCAGGTCTCAACAAATGTGGTTTTGAGATGCCTACAATATACATCCCCAACCCACAGAGGCCGAGTCGCTGTGTGAACCAGATCGATGGGGTGTGTCAGACCATCGAGAAGACCATCAACCAGGCCGTTCAGAAGActttggatcagctggagaaaGACTGTGACCTTATTTGTTCCACCATCAGCAGCAGACTAGAGCAGGACAGGGCTGATGTGACTCACAACAAAAGCGTCCGTCTTCACTCGTTCTTGTGTGGCGCTCTGGGTATTTTCCTTCCCGCCCTCTTCATCCTCAGTTTCATTTTGAACACCTTCTCTAAAGAGCAGCTGGAAGAACTGTTGGGTGAAGGACTGGCTCGGACCCTCTCCATCTTTACAGGAATAGTGATGTATTCATGGGACTGGATACCAGAAGATGGACAAGTAGTGTTTGTCATCTTTTTTGGAGCTTTTTGCTACCTCCTGCTTTTCCTAGCAAAGTATTTTGCAGGCCGAGGGAATAAGACTCTGACAAAGAAGGAGAAGAGGACGATGGCAGAGTACAGTGATTATATCCAGGATATCGTCAAAACTAAGAAGGGGAAATTGTATGAATGGTACCTCCAGCAGTGTGCAGCAGAATATGACCTCTGAGCCTGGGTAAGCTGAAGACACGTACACGTACTGTATGTCGGTGTATTGCTACAAGATTTTGTGAAAAGCGGATCATCTGCCATGGGGCATCATTTAGTGTTTATGGTGGAATCAGTGGGACTTGTGATCATCCACCAAATGGTCAGGTTTTTCTCTTCTCAGTCGAGCAGGTGTAACCTCTAAATGCAGCAGATATCACTGCCAATATTTATCATCTCAAGAGCTTCGATTAAAGAGGAAGTGCCTTTATTAGTCAGTACAGGAGAAACTTATTTCATAAtgtgaatagattttttttcagtttttgtagTAAGTATAGGTTGATGCCAGATACAAAGTGTTTACAAactttttcttaatttcttcATAAGTAACTTGCAGCTGCTTTCTGCCAGCAAAAGGTTTTATAATGTCCTCTGTAAAGCCCGTTCTCATATAGTCAAGGTCCTTGAATCTAACAGCACCGTCCTGAAGTCTGTCATGTTGTCTTTATACGGTACCAGAATGTCCTACACTTGTGTTTGACTGTTAGCAATACAATAACCAATGCTGTGTGATGACACTTGGGCATTATGTTcagacattttataaactacttTCATACCAATAAGACTGCAAGCTCCTTTCTGCCTACAAAGCGTCTCTGTCCTGCTATTAGACGTTTGTTTTGTTGCGTGATTTGTACAGCCATCAGATATTTTCTTAGACAAGGCATTATTATGTGATAGTATTTATACAAACCAGTCAGACTTGTGATTTAGAAAAGTGGTGAgcaatgaagtctgttactgcACTGATGTGTATCTCTGAGTTCAACCTCATGTTGTTCAATCATGTTGTCTGTAGATCGGTGTCACTCAAATCTTTTATGACTACAACACCATGTAATGCCTTCACTCCAGTGTTTTTAAGATATATTTTAGTCTTCAAAGTGCTTTTTACCCAAATAATGTAGAAAACCCTCTATGGgctgtttgcaatatcattgtGAACACTGTCAGTTTTTACTGTGTCTCTTTGTGAAACTTGTGTGTGAATTTATCTATTCTGTGTAATTTTTccataatgtatttttattgtatgaAACCGAGGCTCAACTGACTAGAATTTTTTCAAGTAATCCCGACTCAAAGAATGAAACTTGTCATAAACCTGCAAACTATGCTCTGTCACTTCCTTGAAAATTATTAAACATTTTCTACCGACTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83839 lncRNA upstream 43677 18531010 ~ 18531311 (+) True G62613
TU83773 lncRNA upstream 72613 18501762 ~ 18502375 (+) True G62560
TU83772 lncRNA upstream 74482 18500125 ~ 18500506 (+) True G62559
TU83739 lncRNA upstream 74867 18499878 ~ 18500121 (+) True G62532
TU83771 lncRNA upstream 76016 18498630 ~ 18498972 (+) True G62558
TU83895 lncRNA downstream 29359 18617074 ~ 18617569 (+) True G62656
TU83911 lncRNA downstream 49011 18636726 ~ 18637221 (+) True G62667
TU83952 lncRNA downstream 149839 18737554 ~ 18742398 (+) False mvk
TU83993 lncRNA downstream 159775 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA downstream 159775 18747490 ~ 18748152 (+) False G62732
XM_039803228.1 mRNA upstream 119912 18441347 ~ 18455076 (+) True tpcn1
XM_039802175.1 mRNA upstream 137798 18432817 ~ 18437190 (+) True cfap73
XM_039802176.1 mRNA upstream 137798 18432817 ~ 18437190 (+) False cfap73
XM_039804356.1 mRNA upstream 155774 18407348 ~ 18419214 (+) True tbx5b
XM_039803607.1 mRNA upstream 174247 18389111 ~ 18400741 (+) False si:ch211-204d2.4
XM_039802345.1 mRNA downstream 49979 18637694 ~ 18642437 (+) True p2rx2
XM_039802880.1 mRNA downstream 73442 18661157 ~ 18685463 (+) True acacb
XM_039802881.1 mRNA downstream 73442 18661157 ~ 18685463 (+) False acacb
XM_039802879.1 mRNA downstream 73442 18661157 ~ 18685463 (+) False acacb
XM_039802883.1 mRNA downstream 73442 18661157 ~ 18685463 (+) False acacb
TU83744 other upstream 155398 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 158982 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 243758 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 565670 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 2040839 16533329 ~ 16534149 (+) False LOC120560897
XR_005639481.1 other downstream 73442 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 847192 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1890097 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1890097 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 2088702 20676417 ~ 20677916 (+) True G63480

Expression Profile